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scnpilot_p_inoc_scaffold_59_24

Organism: SCNpilot_P_inoc_Novosphingobium_62_280

near complete RP 50 / 55 MC: 1 BSCG 51 / 51 ASCG 11 / 38
Location: 23599..23934

Top 3 Functional Annotations

Value Algorithm Source
conjugal transfer protein TrbC n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000366C078 similarity UNIREF
DB: UNIREF100
  • Identity: 77.5
  • Coverage: 102.0
  • Bit_score: 158
  • Evalue 3.10e-36
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2 Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 77.5
  • Coverage: 102.0
  • Bit_score: 158
  • Evalue 4.40e-36
conjugal transfer protein TrbC similarity KEGG
DB: KEGG
  • Identity: 76.5
  • Coverage: 102.0
  • Bit_score: 156
  • Evalue 3.30e-36

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Taxonomy

RHI_Sphingopyxis_65_19 → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 336
ATGACCTCATCGCATGCCTTCAACCTGCGCGCTGCCTTCCTGCCCGGCGCGGCGCTTGCTGTCTCGCTGCTGCTCGCCGATCCCGCTCTGGCCTCGGGCACCGGCATGCCCTGGGAGACCCCGCTCAACAATATTCTCGAATCCGTGCAGGGCCCGGTCGCCAAGATCATCGCAGTGATGATCATCATCACCACCGGTCTGACGCTGGCCTTTGGCGAGACGGCGGGCGGTTTCCGGCGGTTGATCCAGATCGTCTTTGGCCTGTCCATTGCCTTTGCCGCTTCCAGCTTCTTCCTCTCCTTCTTCAGCTTCGGCGGCGGAGCGCTGGTCGGGTGA
PROTEIN sequence
Length: 112
MTSSHAFNLRAAFLPGAALAVSLLLADPALASGTGMPWETPLNNILESVQGPVAKIIAVMIIITTGLTLAFGETAGGFRRLIQIVFGLSIAFAASSFFLSFFSFGGGALVG*