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ACD28_86

Alias: ACD28_10157.34453.12

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Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD28_86_1

Not on your lists

comp(1..1134)
DNA (1134bp) protein (378aa)
phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YKL5_9FLAO (db=UNIREF evalue=4.0e-49 bit_score=199.0 identity=40.44 coverage=58.994708994709)
seg (db=Seg db_id=seg from=125 to=135)
TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosp (db=HMMTigr db_id=TIGR00007 from=2 to=232 evalue=2.4e-98 interpro_id=IPR006063 interpro_description=Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO=Biological Process: histidine biosynthetic process (GO:0000105), Molecular Function: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity (GO:0003949))
Curation indicates links to ACD28_29057.20650.12G0001 Jill Banfield (11/15/12)
ACD28_86_2

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comp(1131..1718)
DNA (588bp) protein (196aa)
Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7APS9_9BACE (db=UNIREF evalue=1.0e-51 bit_score=205.0 identity=52.24 coverage=98.9795918367347)
imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
Imidazole glycerol phosphate synthase, glutamine amidotransferase HisH subunit (db=HMMPIR db_id=PIRSF000495 from=1 to=194 evalue=9.9e-98 interpro_id=IPR016226 interpro_description=Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit H GO=Biological Process: histidine biosynthetic process (GO:0000105), Cellular Component: cytoplasm (GO:0005737), Molecular Function: transferase activity (GO:0016740))
IMP_synth_hisH: imidazole glycerol pho (db=HMMTigr db_id=TIGR01855 from=2 to=195 evalue=2.5e-93 interpro_id=IPR010139 interpro_description=Imidazole glycerol phosphate synthase, subunit H GO=Biological Process: histidine biosynthetic process (GO:0000105), Cellular Component: cytoplasm (GO:0005737), Molecular Function: transferase activity, transferring pentosyl groups (GO:0016763))
ACD28_86_3

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comp(1739..2341)
DNA (603bp) protein (201aa)
Imidazoleglycerol-phosphate dehydratase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZPW2_9PLAN (db=UNIREF evalue=9.0e-57 bit_score=223.0 identity=55.33 coverage=96.5174129353234)
Imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
IGP_DEHYDRATASE_2 (db=PatternScan db_id=PS00955 from=161 to=173 evalue=0.0 interpro_id=IPR020565 interpro_description=Imidazoleglycerol-phosphate dehydratase, conserved site GO=Biological Process: histidine biosynthetic process (GO:0000105), Molecular Function: imidazoleglycerol-phosphate dehydratase activity (GO:0004424))
IGP_DEHYDRATASE_1 (db=PatternScan db_id=PS00954 from=65 to=78 evalue=0.0 interpro_id=IPR020565 interpro_description=Imidazoleglycerol-phosphate dehydratase, conserved site GO=Biological Process: histidine biosynthetic process (GO:0000105), Molecular Function: imidazoleglycerol-phosphate dehydratase activity (GO:0004424))
ACD28_86_4

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comp(2353..2862)
DNA (510bp) protein (170aa)
hisB; histidinol-phosphatase/imisazoleglycerol-phosphat e dehydratase (EC:3.1.3.15)
hisB_Nterm: histidinol-phosphatase (db=HMMTigr db_id=TIGR01261 from=3 to=156 evalue=1.0e-58 interpro_id=IPR005954 interpro_description=Histidinol-phosphatase GO=Biological Process: histidine biosynthetic process (GO:0000105), Molecular Function: histidinol-phosphatase activity (GO:0004401), Molecular Function: imidazoleglycerol-phosphate dehydratase activity (GO:0004424), Cellular Component: cytoplasm (GO:0005737))
Histidinol-ppas: histidinol-phosphate (db=HMMTigr db_id=TIGR01656 from=4 to=151 evalue=1.4e-47 interpro_id=IPR006543 interpro_description=Histidinol-phosphate phosphatase GO=Biological Process: histidine biosynthetic process (GO:0000105), Molecular Function: histidinol-phosphatase activity (GO:0004401))
HAD-like (db=superfamily db_id=SSF56784 from=1 to=150 evalue=1.8e-40)
ACD28_86_5

Not on your lists

comp(2871..3929)
DNA (1059bp) protein (353aa)
hisC; histidinol-phosphate transaminase (EC:2.6.1.9)
seg (db=Seg db_id=seg from=247 to=258)
AA_TRANSFER_CLASS_2 (db=PatternScan db_id=PS00599 from=210 to=219 evalue=0.0 interpro_id=IPR001917 interpro_description=Aminotransferase, class-II, pyridoxal-phosphate binding site GO=Biological Process: metabolic process (GO:0008152), Molecular Function: transferase activity (GO:0016740))
SUBGROUP I AMINOTRANSFERASE RELATED (db=HMMPanther db_id=PTHR11751 from=38 to=351 evalue=1.6e-72)
ACD28_86_6

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comp(3973..5319)
DNA (1347bp) protein (449aa)
Histidinol dehydrogenase n=4 Tax=Bacteroidales RepID=A6LAM1_PARD8 (db=UNIREF evalue=3.0e-114 bit_score=416.0 identity=51.88 coverage=88.195991091314)
hisD; histidinol dehydrogenase
hisD; histidinol dehydrogenase
coiled-coil (db=Coil db_id=coil from=84 to=105 evalue=NA)
ACD28_86_7
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(5316..5942)
DNA (627bp) protein (209aa)
ATP phosphoribosyltransferase n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UMN5_9FLAO (db=UNIREF evalue=8.0e-45 bit_score=183.0 identity=44.28 coverage=94.7368421052632)
ATP phosphoribosyltransferase
ATP_P_PHORIBOSYLTR (db=PatternScan db_id=PS01316 from=149 to=170 evalue=0.0 interpro_id=IPR018198 interpro_description=ATP phosphoribosyltransferase, conserved site)
hisG: ATP phosphoribosyltransferase (db=HMMTigr db_id=TIGR00070 from=10 to=190 evalue=1.6e-70 interpro_id=IPR013820 interpro_description=ATP phosphoribosyltransferase, catalytic domain GO=Biological Process: histidine biosynthetic process (GO:0000105), Molecular Function: ATP phosphoribosyltransferase activity (GO:0003879), Cellular Component: cytoplasm (GO:0005737))
ACD28_86_8
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists


comp(6001..7308)
DNA (1308bp) protein (436aa)
histidyl-tRNA synthetase (EC:6.1.1.21)
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidyl-tRNA synthetase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=D5SMF8_PLALI (db=UNIREF evalue=7.0e-93 bit_score=344.0 identity=42.82 coverage=94.2660550458716)
seg (db=Seg db_id=seg from=142 to=151)
ACD28_86_9

Not on your lists

comp(7377..7691)
DNA (315bp) protein (105aa)
TrpR like protein, YerC/YecD n=3 Tax=Bacillales RepID=C6CV46_PAESJ (db=UNIREF evalue=2.0e-19 bit_score=97.4 identity=48.89 coverage=84.7619047619048)
TrpR family protein YerC/YecD
yecD_yerC: TrpR homolog YerC/YecD (db=HMMTigr db_id=TIGR02531 from=15 to=102 evalue=1.5e-26 interpro_id=IPR013368 interpro_description=TrpR homologue YerC/YecD)
Trp_repressor (db=HMMPfam db_id=PF01371 from=18 to=102 evalue=7.5e-26 interpro_id=IPR000831 interpro_description=Trp repressor GO=Molecular Function: transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD28_86_10
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(7782..8009)
DNA (228bp) protein (76aa)
7782..8009 - (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_86_11

Not on your lists

8093..8929
DNA (837bp) protein (279aa)
dTDP-4-dehydrorhamnose reductase
NAD DEPENDENT EPIMERASE/DEHYDRATASE (db=HMMPanther db_id=PTHR10366 from=5 to=271 evalue=2.5e-68)
NAD DEPENDENT EPIMERASE/DEHYDRATASE (db=HMMPanther db_id=PTHR10366:SF2 from=5 to=271 evalue=2.5e-68)
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=1 to=275 evalue=2.2e-30)
ACD28_86_12
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

9214..9465
DNA (252bp) protein (84aa)
seg (db=Seg db_id=seg from=63 to=82)
seg (db=Seg db_id=seg from=1 to=62)
HISTONEH5 (db=FPrintScan db_id=PR00624 from=63 to=82 evalue=1.6e-05 interpro_id=IPR005819 interpro_description=Histone H5 GO=Cellular Component: nucleosome (GO:0000786), Molecular Function: DNA binding (GO:0003677), Biological Process: nucleosome assembly (GO:0006334))
HISTONEH5 (db=FPrintScan db_id=PR00624 from=41 to=58 evalue=1.6e-05 interpro_id=IPR005819 interpro_description=Histone H5 GO=Cellular Component: nucleosome (GO:0000786), Molecular Function: DNA binding (GO:0003677), Biological Process: nucleosome assembly (GO:0006334))
ACD28_86_13
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(9543..13859)
DNA (4317bp) protein (1439aa)
hypothetical protein (db=KEGG evalue=8.0e-11 bit_score=73.9 identity=24.71 coverage=26.546212647672)
seg (db=Seg db_id=seg from=951 to=963)
seg (db=Seg db_id=seg from=426 to=438)
PLP-dependent transferases (db=superfamily db_id=SSF53383 from=862 to=1255 evalue=6.8e-16 interpro_id=IPR015424 interpro_description=Pyridoxal phosphate-dependent transferase, major domain)
ACD28_86_14

Not on your lists

14024..14188
DNA (165bp) protein (55aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Uncharacterized protein {ECO:0000313|EMBL:EKD94033.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_86_15
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

14205..14864
DNA (660bp) protein (220aa)
Iron-sulfur cluster assembly accessory protein
seg (db=Seg db_id=seg from=21 to=33)
HES-B (db=HMMPanther db_id=PTHR10072:SF26 from=106 to=217 evalue=6.8e-21)
HES-B (db=HMMPanther db_id=PTHR10072 from=106 to=217 evalue=6.8e-21 interpro_id=IPR000361 interpro_description=FeS cluster biogenesis)
ACD28_86_16

Not on your lists

14975..17509
DNA (2535bp) protein (845aa)
seg (db=Seg db_id=seg from=338 to=353)
seg (db=Seg db_id=seg from=191 to=202)
Uncharacterized protein {ECO:0000313|EMBL:EKD94035.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_86_17

Not on your lists

17506..18084
DNA (579bp) protein (193aa)
Para-aminobenzoate/anthranilate synthase glutamine amidotransferasecomponent II n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q096N7_STIAU (db=UNIREF evalue=9.0e-63 bit_score=242.0 identity=57.81 coverage=98.4455958549223)
Para-aminobenzoate/anthranilate synthase glutamine amidotransferasecomponent II (EC:4.1.3.27)
GMP SYNTHASE-RELATED (db=HMMPanther db_id=PTHR11922 from=2 to=191 evalue=2.1e-90)
ANTHRANILATE SYNTHASE COMPONENT II (db=HMMPanther db_id=PTHR11922:SF3 from=2 to=191 evalue=2.1e-90)
ACD28_86_18

Not on your lists

18437..19336
DNA (900bp) protein (300aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=57 to=76)
Uncharacterized protein {ECO:0000313|EMBL:EKD94037.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_86_19
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists


19415..19963
DNA (549bp) protein (183aa)
50S ribosomal protein L7/L12 n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B21A2 (db=UNIREF evalue=1.0e-41 bit_score=172.0 identity=50.0 coverage=89.0710382513661)
coiled-coil (db=Coil db_id=coil from=8 to=29 evalue=NA)
50S ribosomal protein L7/L12 {ECO:0000313|EMBL:KKT75683.1}; TaxID=1619057 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_44_7.;"
hypothetical protein
ACD28_86_20
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

19972..21123
DNA (1152bp) protein (384aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=161 to=183)
seg (db=Seg db_id=seg from=169 to=182)
seg (db=Seg db_id=seg from=367 to=378)
seg (db=Seg db_id=seg from=279 to=295)
ACD28_86_21
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

21568..22251
DNA (684bp) protein (228aa)
twitching motility protein
coiled-coil (db=Coil db_id=coil from=143 to=164 evalue=NA)
T2SP_E (db=PatternScan db_id=PS00662 from=68 to=82 evalue=0.0 interpro_id=IPR001482 interpro_description=Type II secretion system protein E GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: transport (GO:0006810))
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=226 evalue=1.4e-57)
ACD28_86_22
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

22370..22588
DNA (219bp) protein (73aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=44 to=59)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=61)
DUF378 (db=HMMPfam db_id=PF04070 from=7 to=58 evalue=6.2e-18 interpro_id=IPR007211 interpro_description=Protein of unknown function DUF378)
ACD28_86_23
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

22708..24075
DNA (1368bp) protein (456aa)
seg (db=Seg db_id=seg from=391 to=406)
seg (db=Seg db_id=seg from=417 to=436)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_86_24
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(24021..24266)
DNA (246bp) protein (82aa)
24021..24266 - (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_86_25
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

24686..25810
DNA (1125bp) protein (375aa)
coiled-coil (db=Coil db_id=coil from=138 to=159 evalue=NA)
coiled-coil (db=Coil db_id=coil from=181 to=223 evalue=NA)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_86_26
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

25956..26417
DNA (462bp) protein (154aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=123 to=145)
transmembrane_regions (db=TMHMM db_id=tmhmm from=88 to=110)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=123 to=134)
ACD28_86_27
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

26421..27173
DNA (753bp) protein (251aa)
seg (db=Seg db_id=seg from=187 to=204)
transmembrane_regions (db=TMHMM db_id=tmhmm from=186 to=208)
transmembrane_regions (db=TMHMM db_id=tmhmm from=223 to=245)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_86_28
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

27178..27666
DNA (489bp) protein (163aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=119 to=141)
transmembrane_regions (db=TMHMM db_id=tmhmm from=80 to=102)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
hypothetical protein cdiviTM7_00617 Tax=GWA2_PER_44_7
ACD28_86_29
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

27671..28129
DNA (459bp) protein (153aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=125 to=147)
transmembrane_regions (db=TMHMM db_id=tmhmm from=90 to=112)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_86_30
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

28150..28650
DNA (501bp) protein (167aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=113 to=135)
transmembrane_regions (db=TMHMM db_id=tmhmm from=70 to=92)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=147 to=166)
Displaying items 1-30 of 36 in total

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