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RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_17

Organism: Deltaproteobacteria bacterium RIFOXYD12_FULL_56_24

near complete RP 46 / 55 MC: 1 BSCG 48 / 51 ASCG 12 / 38 MC: 1
Location: 20727..21308

Top 3 Functional Annotations

Value Algorithm Source
RpoE; DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 193.0
  • Bit_score: 386
  • Evalue 2.20e-104
RNA polymerase sigma factor id=2299585 bin=GWB2_Nitrospirae_rel_47_37 species=Limnobacter sp. MED105 genus=Limnobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum) similarity UNIREF
DB: UNIREF100
  • Identity: 61.5
  • Coverage: 182.0
  • Bit_score: 230
  • Evalue 1.10e-57
RpoE; DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein similarity KEGG
DB: KEGG
  • Identity: 45.7
  • Coverage: 184.0
  • Bit_score: 149
  • Evalue 7.10e-34

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Taxonomy

RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 582
ATGCCTCCAGATCTGTACCTGATAACCAGAGCCAAGGATGGCGATGCCTCGGCCTTCGAGGAGCTGGTCTGCACCCATCAGGACCGGATCTACAACCTCTGCCGCCATATGCTCGGCCAGGCTCAGGACGCCGAGGATGCGGCCCAGGACTCCTTTCTCAAGGCCTACCGCAATCTGGGCAGCTTCACGCCCGACGCCTCCTTTACGACCTGGCTCTACCGCATCGCCATCAACACCTGCCTTGACCGCCGGAAAAAACCCCTTTGGCTCTCCCTGTTTCAGAAAAACGCCAAAGGCGAGGAGTTCATGCTTGCAGAACCGGCGCACGGCTTCACCCCCGAGCGGCTCTACGAGTCAAAACAGCTGAGAGAGCTGGTGCAGGCCTGCCTTGCCGGGCTGCCGGTCAAACTGAAGGCGGCCTTGGTGCTCAAGGAGTTGGAAGGCTGTTCTTACGAGGAGATCGCCGAGGCCTTGGATGTTTCCCTGGGTACGGTAAAGTCCAGAATTTCGCGGGCCCGGGAGGAATTGCGGCAGATGATGCGAAAAAGTACGGAAACTATCCAGCTCAAAGCCAAAAAGTGA
PROTEIN sequence
Length: 194
MPPDLYLITRAKDGDASAFEELVCTHQDRIYNLCRHMLGQAQDAEDAAQDSFLKAYRNLGSFTPDASFTTWLYRIAINTCLDRRKKPLWLSLFQKNAKGEEFMLAEPAHGFTPERLYESKQLRELVQACLAGLPVKLKAALVLKELEGCSYEEIAEALDVSLGTVKSRISRAREELRQMMRKSTETIQLKAKK*