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SCNpilot_expt_750_bf_UNK

In projects: SCNPILOT_EXPT_750_BF

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 8.95 Longest contig: 69.54 Kbp Bin length: 57.41 Mbp GC content: 55.10 %
Contigs count: 27580 Features count: 77384 rRNAs count: 26 tRNAs count: 617

Genome completeness

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 18 / 38 MC: 17
Displaying items 26901-26950 of 27580 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_bf_scaffold_23055
Species: CSP1_6_Rokubacteria (100%)
2 2349 bp 62.54 5.00 100.38
scnpilot_expt_750_bf_scaffold_24326
Domain: Bacteria (66.67%)
3 1303 bp 63.47 3.84 100.38
scnpilot_expt_750_bf_scaffold_31609
Species: Agrobacterium tumefaciens (100%)
2 1040 bp 60.96 2.88 100.38
scnpilot_expt_750_bf_scaffold_18889
Species: Niastella koreensis (50%)
2 1557 bp 45.92 4.82 100.38
scnpilot_expt_750_bf_scaffold_31709
Species: Paracoccus halophilus (50%)
2 1037 bp 62.30 5.30 100.39
scnpilot_expt_750_bf_scaffold_31721
Species: Streptomyces vietnamensis (50%)
2 1037 bp 76.08 2.89 100.39
scnpilot_expt_750_bf_scaffold_31781
Species: Devosia epidermidihirudinis (50%)
2 1034 bp 66.15 3.63 100.39
scnpilot_expt_750_bf_scaffold_31785
Species: marine sediment metagenome (50%)
2 1034 bp 67.60 5.32 100.39
scnpilot_expt_750_bf_scaffold_24645
Species: Nitratireductor aquibiodomus (66.67%)
3 1291 bp 65.30 5.03 100.39
scnpilot_expt_750_bf_scaffold_31888
Species: Devosia riboflavina (100%)
2 1031 bp 59.36 6.55 100.39
scnpilot_expt_750_bf_scaffold_31889
Species: Algoriphagus machipongonensis (50%)
2 1031 bp 39.77 3.88 100.39
scnpilot_expt_750_bf_scaffold_10625
Order: Micrococcales (66.67%)
3 2319 bp 70.38 6.90 100.39
scnpilot_expt_750_bf_scaffold_7950
Genus: Devosia (100%)
4 2830 bp 67.35 5.57 100.39
scnpilot_expt_750_bf_scaffold_25484
Species: Devosia sp. 17-2-E-8 (50%)
4 2570 bp 65.06 5.25 100.39
scnpilot_expt_750_bf_scaffold_19231
Species: Candidatus Caedibacter acanthamoebae (50%)
2 1539 bp 38.01 4.87 100.39
scnpilot_expt_750_bf_scaffold_9180
Genus: Spirosoma (50%)
4 3323 bp 45.65 4.36 100.39
scnpilot_expt_750_bf_scaffold_32213
Species: Devosia epidermidihirudinis (50%)
2 1019 bp 66.83 4.66 100.39
scnpilot_expt_750_bf_scaffold_25230
Species: Alicycliphilus denitrificans (66.67%)
3 1270 bp 68.82 3.15 100.39
scnpilot_expt_750_bf_scaffold_19515
Species: Sphingopyxis sp. MC1 (100%)
4 1524 bp 70.01 3.94 100.39
scnpilot_expt_750_bf_scaffold_32319
Species: Oligotropha carboxidovorans (50%)
2 1016 bp 66.54 4.18 100.39
scnpilot_expt_750_bf_scaffold_8118 3 2788 bp 44.73 334.02 100.40
scnpilot_expt_750_bf_scaffold_13033
Species: Rhizobium sp. UR51a (66.67%)
3 2017 bp 68.77 6.32 100.40
scnpilot_expt_750_bf_scaffold_6625
Species: Chryseobacterium gleum (100%)
3 3780 bp 39.13 4.63 100.40
scnpilot_expt_750_bf_scaffold_13058
Genus: Bradyrhizobium (66.67%)
3 2014 bp 65.29 3.72 100.40
scnpilot_expt_750_bf_scaffold_32526
Species: Oceanibaculum indicum (50%)
2 1007 bp 64.35 4.72 100.40
scnpilot_expt_750_bf_scaffold_32546
Species: Pseudoalteromonas arctica (50%)
2 1007 bp 37.93 1.74 100.40
scnpilot_expt_750_bf_scaffold_9560
Species: Flavobacterium rivuli (50%)
2 2501 bp 36.51 4.40 100.40
scnpilot_expt_750_bf_scaffold_12203
Phylum: Proteobacteria (83.33%)
6 4249 bp 67.64 4.12 100.40
scnpilot_expt_750_bf_scaffold_8291
Order: Xanthomonadales (75%)
4 2746 bp 65.84 4.92 100.40
scnpilot_expt_750_bf_scaffold_25965
Species: Rhizobium sp. CF080 (50%)
2 1243 bp 65.89 5.83 100.40
scnpilot_expt_750_bf_scaffold_26052
Genus: Sphingobium (66.67%)
3 1240 bp 68.23 4.64 100.40
scnpilot_expt_750_bf_scaffold_8436
Species: Rhizobium tropici (66.67%)
3 2713 bp 64.25 3.96 100.41
scnpilot_expt_750_bf_scaffold_10783
Genus: Microbacterium (80%)
5 2925 bp 62.26 4.53 100.41
scnpilot_expt_750_bf_scaffold_20843
Species: R_Betaproteobacteria_63_19 (66.67%)
3 1458 bp 70.71 5.14 100.41
scnpilot_expt_750_bf_scaffold_9134
Order: Burkholderiales (100%)
3 3149 bp 74.50 9.84 100.41
scnpilot_expt_750_bf_scaffold_7721
Species: Agrobacterium tumefaciens (75%)
4 2892 bp 66.08 6.57 100.42
scnpilot_expt_750_bf_scaffold_37558
Genus: Flavobacterium (66.67%)
3 1431 bp 40.32 2.80 100.42
scnpilot_expt_750_bf_scaffold_21611
Species: Kibdelosporangium sp. MJ126-NF4 (66.67%)
3 1422 bp 75.11 4.40 100.42
scnpilot_expt_750_bf_scaffold_17208
Species: Sphingobium sp. SYK-6 (66.67%)
3 1658 bp 68.09 5.43 100.42
scnpilot_expt_750_bf_scaffold_14269
Species: Bosea sp. LC85 (100%)
2 1894 bp 67.27 3.70 100.42
scnpilot_expt_750_bf_scaffold_38894
Species: Fibrella aestuarina (50%)
2 1416 bp 46.61 4.59 100.42
scnpilot_expt_750_bf_scaffold_22305
Species: Sphingomonas sp. WHSC-8 (66.67%)
6 3519 bp 67.06 6.11 100.43
scnpilot_expt_750_bf_scaffold_6405
Genus: Flavobacterium (100%)
3 3280 bp 36.74 3.89 100.43
scnpilot_expt_750_bf_scaffold_14533
Genus: Acidovorax (66.67%)
3 1867 bp 72.79 4.82 100.43
scnpilot_expt_750_bf_scaffold_28280
Species: Sphingopyxis sp. MC1 (100%)
2 1162 bp 66.18 6.02 100.43
scnpilot_expt_750_bf_scaffold_28287
Species: Flavobacterium aquatile (50%)
2 1162 bp 38.55 3.01 100.43
scnpilot_expt_750_bf_scaffold_28315
Species: Acidovorax sp. JS42 (100%)
4 1858 bp 71.26 6.46 100.43
scnpilot_expt_750_bf_scaffold_22196
Species: Flavobacterium hydatis (50%)
2 1392 bp 43.97 3.41 100.43
scnpilot_expt_750_bf_scaffold_22220
Order: Rhizobiales (66.67%)
3 1392 bp 64.22 2.51 100.43
scnpilot_expt_750_bf_scaffold_14688
Species: Shinella sp. DD12 (100%)
2 1855 bp 63.34 5.26 100.43
Displaying items 26901-26950 of 27580 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.