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SCNpilot_expt_750_bf_UNK

In projects: SCNPILOT_EXPT_750_BF

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 8.95 Longest contig: 69.54 Kbp Bin length: 57.41 Mbp GC content: 55.10 %
Contigs count: 27580 Features count: 77384 rRNAs count: 26 tRNAs count: 617

Genome completeness

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 18 / 38 MC: 17
Displaying items 26951-27000 of 27580 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_bf_scaffold_28350
Species: Mizugakiibacter sediminis (50%)
2 1159 bp 65.31 5.39 100.43
scnpilot_expt_750_bf_scaffold_22266
Order: Rhizobiales (100%)
3 1389 bp 67.46 6.48 100.43
scnpilot_expt_750_bf_scaffold_17789
Class: Betaproteobacteria (100%)
3 1619 bp 63.31 4.32 100.43
scnpilot_expt_750_bf_scaffold_10680
Order: Sphingomonadales (66.67%)
3 2312 bp 61.63 4.22 100.43
scnpilot_expt_750_bf_scaffold_11261
Order: Xanthomonadales (75%)
8 4848 bp 64.44 5.57 100.43
scnpilot_expt_750_bf_scaffold_12585
Species: Rhizobium sp. (50%)
2 2070 bp 62.42 4.11 100.44
scnpilot_expt_750_bf_scaffold_8661
Species: Sphingobacterium spiritivorum (66.67%)
6 3447 bp 40.18 4.64 100.44
scnpilot_expt_750_bf_scaffold_22532 3 1377 bp 65.65 3.45 100.44
scnpilot_expt_750_bf_scaffold_18028
Species: Shinella sp. DD12 (66.67%)
3 1604 bp 64.53 3.43 100.44
scnpilot_expt_750_bf_scaffold_12664
Species: Bacteroides thetaiotaomicron (50%)
2 2061 bp 44.20 4.00 100.44
scnpilot_expt_750_bf_scaffold_6048
Species: Leadbetterella byssophila (50%)
2 3408 bp 44.84 3.37 100.44
scnpilot_expt_750_bf_scaffold_12804
Genus: Hyphomicrobium (50%)
4 2043 bp 68.48 5.75 100.44
scnpilot_expt_750_bf_scaffold_15106
Species: Methylibium petroleiphilum (50%)
2 1816 bp 69.60 4.68 100.44
scnpilot_expt_750_bf_scaffold_15109
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (75%)
4 1816 bp 61.73 11.15 100.44
scnpilot_expt_750_bf_scaffold_22936
Species: Asticcacaulis sp. AC466 (66.67%)
3 1359 bp 66.74 3.50 100.44
scnpilot_expt_750_bf_scaffold_29241
Species: Sphingomonas sp. WHSC-8 (50%)
2 1126 bp 66.07 3.11 100.44
scnpilot_expt_750_bf_scaffold_13143
Species: Sphingomonas sp. WHSC-8 (75%)
4 2004 bp 68.31 6.24 100.45
scnpilot_expt_750_bf_scaffold_29615
Species: Sphingobium sp. SYK-6 (100%)
2 1111 bp 66.16 4.05 100.45
scnpilot_expt_750_bf_scaffold_27883
Species: Rhizobium tropici (100%)
2 1777 bp 59.03 4.08 100.45
scnpilot_expt_750_bf_scaffold_19086
Order: Micrococcales (66.67%)
3 1547 bp 77.70 4.20 100.45
scnpilot_expt_750_bf_scaffold_30110
Genus: Sphingobacterium (100%)
3 1093 bp 43.00 3.66 100.46
scnpilot_expt_750_bf_scaffold_5855
Species: Rhodanobacter sp. 115 (60%)
5 3488 bp 71.59 7.10 100.46
scnpilot_expt_750_bf_scaffold_11680
Species: Sphingobium sp. SYK-6 (100%)
3 2177 bp 66.79 5.05 100.46
scnpilot_expt_750_bf_scaffold_11789
Species: Legionella oakridgensis (100%)
2 2162 bp 33.95 3.12 100.46
scnpilot_expt_750_bf_scaffold_30419
Species: Luteibacter yeojuensis (50%)
2 1081 bp 65.40 3.93 100.46
scnpilot_expt_750_bf_scaffold_24526
Species: Mesorhizobium sp. LNHC252B00 (50%)
2 1296 bp 60.65 4.05 100.46
scnpilot_expt_750_bf_scaffold_24610
Species: Acidovorax sp. NO-1 (50%)
2 1293 bp 62.57 5.22 100.46
scnpilot_expt_750_bf_scaffold_30582
Species: Sphingopyxis sp. MC1 (100%)
2 1075 bp 60.93 3.95 100.47
scnpilot_expt_750_bf_scaffold_19950
Species: Stenotrophomonas rhizophila (100%)
2 1502 bp 65.38 4.83 100.47
scnpilot_expt_750_bf_scaffold_24851
Species: Brevundimonas nasdae (66.67%)
3 1284 bp 69.55 5.45 100.47
scnpilot_expt_750_bf_scaffold_16534
Species: Alicycliphilus denitrificans (50%)
2 1708 bp 72.19 7.46 100.47
scnpilot_expt_750_bf_scaffold_20133
Species: Rhizobium leguminosarum (100%)
3 1493 bp 69.59 5.02 100.47
scnpilot_expt_750_bf_scaffold_14012
Genus: Flavobacterium (100%)
4 1917 bp 46.01 3.13 100.47
scnpilot_expt_750_bf_scaffold_30904
Order: Rhizobiales (66.67%)
3 1063 bp 63.88 5.41 100.47
scnpilot_expt_750_bf_scaffold_20297
Species: Ensifer adhaerens (100%)
2 1484 bp 64.82 5.90 100.47
scnpilot_expt_750_bf_scaffold_30993
Species: Bacillus smithii (50%)
2 1060 bp 33.49 1.89 100.47
scnpilot_expt_750_bf_scaffold_16738
Species: Flavobacterium rivuli (50%)
2 1693 bp 42.65 3.25 100.47
scnpilot_expt_750_bf_scaffold_25290
Species: Devosia geojensis (50%)
2 1269 bp 69.66 6.30 100.47
scnpilot_expt_750_bf_scaffold_25347
Species: Gordonia otitidis (50%)
2 1266 bp 73.38 2.96 100.47
scnpilot_expt_750_bf_scaffold_20531
Class: Alphaproteobacteria (100%)
3 1472 bp 68.89 4.42 100.48
scnpilot_expt_750_bf_scaffold_25488
Species: Rhizobium freirei (100%)
2 1260 bp 60.79 2.38 100.48
scnpilot_expt_750_bf_scaffold_20614
Species: Sphingobium yanoikuyae (100%)
4 1469 bp 64.47 4.59 100.48
scnpilot_expt_750_bf_scaffold_25561
Species: Brachyspira pilosicoli (50%)
2 1257 bp 28.00 19.49 100.48
scnpilot_expt_750_bf_scaffold_20735
Species: Sphingobium sp. SYK-6 (100%)
3 1463 bp 65.89 4.61 100.48
scnpilot_expt_750_bf_scaffold_20801 3 1460 bp 61.23 2.74 100.48
scnpilot_expt_750_bf_scaffold_14458
Species: Microvirga aerilata (50%)
2 1875 bp 47.04 3.20 100.48
scnpilot_expt_750_bf_scaffold_26677
Species: GWA2_Rokubacteria_70_23_curated (50%)
2 1875 bp 73.07 6.13 100.48
scnpilot_expt_750_bf_scaffold_25815
Species: Sphingobium sp. SYK-6 (100%)
3 1248 bp 66.11 3.21 100.48
scnpilot_expt_750_bf_scaffold_25816
Species: Flavobacterium enshiense (50%)
2 1248 bp 39.66 3.81 100.48
scnpilot_expt_750_bf_scaffold_31896
Species: Rhizobium tropici (100%)
2 1030 bp 65.73 3.64 100.49
Displaying items 26951-27000 of 27580 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.