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SCNpilot_expt_750_bf_UNK

In projects: SCNPILOT_EXPT_750_BF

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 8.95 Longest contig: 69.54 Kbp Bin length: 57.41 Mbp GC content: 55.10 %
Contigs count: 27580 Features count: 77384 rRNAs count: 26 tRNAs count: 617

Genome completeness

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 18 / 38 MC: 17
Displaying items 27101-27150 of 27580 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_bf_scaffold_4842
Phylum: Proteobacteria (54.55%)
11 3972 bp 65.11 4.59 100.68
scnpilot_expt_750_bf_scaffold_27919
Species: BJP_08E140C01_Bacteriodales_41_10 (50%)
2 1174 bp 38.59 3.19 100.68
scnpilot_expt_750_bf_scaffold_28003
Genus: Devosia (100%)
3 1171 bp 68.57 5.34 100.68
scnpilot_expt_750_bf_scaffold_20802
Species: Niastella koreensis (50%)
2 1460 bp 58.36 3.77 100.69
scnpilot_expt_750_bf_scaffold_41141
Species: Frigoribacterium sp. MEB024 (50%)
4 1311 bp 73.46 3.62 100.69
scnpilot_expt_750_bf_scaffold_21183
Species: Dyadobacter fermentans (100%)
4 2896 bp 51.38 2.94 100.69
scnpilot_expt_750_bf_scaffold_18270
Species: consortium cosmid clone pGZ1 (100%)
2 1591 bp 71.78 4.09 100.69
scnpilot_expt_750_bf_scaffold_28713
Species: Sphingopyxis sp. MC1 (100%)
2 1147 bp 63.38 3.27 100.70
scnpilot_expt_750_bf_scaffold_21367
Species: Caldisalinibacter kiritimatiensis (50%)
2 1433 bp 51.99 1.40 100.70
scnpilot_expt_750_bf_scaffold_5347
Species: Rhizobium tropici (100%)
3 3703 bp 60.55 3.38 100.70
scnpilot_expt_750_bf_scaffold_24926
Class: Alphaproteobacteria (66.67%)
3 1281 bp 54.80 3.12 100.70
scnpilot_expt_750_bf_scaffold_14764
Species: Candidatus Koribacter versatilis (50%)
2 1847 bp 62.05 4.60 100.70
scnpilot_expt_750_bf_scaffold_25009
Species: Novosphingobium sp. PP1Y (100%)
2 1278 bp 67.21 4.30 100.70
scnpilot_expt_750_bf_scaffold_18883
Species: Bradyrhizobium sp. DFCI-1 (50%)
2 1558 bp 58.34 4.65 100.71
scnpilot_expt_750_bf_scaffold_21745
Species: Mesorhizobium plurifarium (50%)
2 1415 bp 40.85 3.53 100.71
scnpilot_expt_750_bf_scaffold_18938
Species: Acidovorax delafieldii (50%)
2 1555 bp 68.75 7.72 100.71
scnpilot_expt_750_bf_scaffold_19046
Species: marine sediment metagenome (50%)
2 1549 bp 26.02 2.42 100.71
scnpilot_expt_750_bf_scaffold_32762
Species: GWA2_Rhodocyclales_65_20_curated (50%)
2 1540 bp 71.10 4.55 100.71
scnpilot_expt_750_bf_scaffold_29459
Species: Sphingobium sp. Ant17 (66.67%)
3 1117 bp 62.85 4.92 100.72
scnpilot_expt_750_bf_scaffold_9738
Species: Devosia sp. DDB001 (50%)
2 3178 bp 69.41 6.69 100.72
scnpilot_expt_750_bf_scaffold_19610
Species: Candidatus Caedibacter acanthamoebae (100%)
2 1519 bp 37.72 2.30 100.72
scnpilot_expt_750_bf_scaffold_29856
Species: Pseudoalteromonas ruthenica (50%)
2 1102 bp 45.37 4.76 100.73
scnpilot_expt_750_bf_scaffold_19735
Order: Rhizobiales (50%)
4 1513 bp 62.06 5.12 100.73
scnpilot_expt_750_bf_scaffold_22741
Species: R_Proteobacteria_53_8 (100%)
2 1367 bp 60.94 5.30 100.73
scnpilot_expt_750_bf_scaffold_26391
Species: uncultured bacterium (50%)
2 1227 bp 66.67 6.72 100.73
scnpilot_expt_750_bf_scaffold_18599
Order: Rhizobiales (50%)
4 2570 bp 60.62 4.09 100.74
scnpilot_expt_750_bf_scaffold_23240 4 1346 bp 66.49 4.46 100.74
scnpilot_expt_750_bf_scaffold_9996
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 3094 bp 64.38 70.86 100.74
scnpilot_expt_750_bf_scaffold_21007
Species: Dysgonomonas mossii (50%)
2 2016 bp 37.90 2.98 100.74
scnpilot_expt_750_bf_scaffold_28889 2 1742 bp 35.07 3.44 100.75
scnpilot_expt_750_bf_scaffold_9569
Order: Sphingobacteriales (50%)
4 4800 bp 48.23 20.89 100.75
scnpilot_expt_750_bf_scaffold_5962
Genus: Rhodanobacter (66.67%)
3 3445 bp 67.78 6.60 100.76
scnpilot_expt_750_bf_scaffold_36376
Species: GWF1_Flavobacteria_32_7_curated (50%)
2 1718 bp 35.86 3.06 100.76
scnpilot_expt_750_bf_scaffold_21001
Order: Burkholderiales (100%)
3 1450 bp 69.45 4.66 100.76
scnpilot_expt_750_bf_scaffold_24218
Species: Bosea sp. LC85 (66.67%)
3 1307 bp 62.05 3.44 100.76
scnpilot_expt_750_bf_scaffold_12418
Species: Flavobacterium sp. CF136 (100%)
2 2090 bp 57.89 3.59 100.77
scnpilot_expt_750_bf_scaffold_8308
Species: Rhodococcus rhodochrous (100%)
2 2742 bp 58.79 4.83 100.77
scnpilot_expt_750_bf_scaffold_31533
Order: Burkholderiales (100%)
3 1042 bp 67.47 4.32 100.77
scnpilot_expt_750_bf_scaffold_31544
Species: Sphingobium sp. SYK-6 (100%)
2 1042 bp 71.79 5.04 100.77
scnpilot_expt_750_bf_scaffold_28319
Order: Rhodospirillales (66.67%)
3 1161 bp 35.31 3.66 100.77
scnpilot_expt_750_bf_scaffold_7003
Species: Candidatus Caedibacter acanthamoebae (75%)
4 3096 bp 39.76 7.83 100.77
scnpilot_expt_750_bf_scaffold_25565
Species: RLO_Burkholderiales_65_40 (66.67%)
3 1935 bp 62.33 4.26 100.77
scnpilot_expt_750_bf_scaffold_31897
Species: Rhizobium freirei (100%)
2 1030 bp 59.03 4.85 100.78
scnpilot_expt_750_bf_scaffold_24889
Species: bacterium YEK0313 (66.67%)
3 1283 bp 59.94 3.31 100.78
scnpilot_expt_750_bf_scaffold_32069
Species: Devosia limi (50%)
2 1024 bp 59.67 4.64 100.78
scnpilot_expt_750_bf_scaffold_32161
Species: Rhodopseudomonas palustris (100%)
2 1021 bp 66.01 4.16 100.78
scnpilot_expt_750_bf_scaffold_32239
Species: Sphingobium sp. SYK-6 (100%)
2 1018 bp 62.77 3.19 100.79
scnpilot_expt_750_bf_scaffold_32245
Order: Rhizobiales (66.67%)
3 1018 bp 70.33 2.95 100.79
scnpilot_expt_750_bf_scaffold_28810
Species: uncultured bacterium (50%)
2 1143 bp 55.12 4.59 100.79
scnpilot_expt_750_bf_scaffold_15215
Species: Chryseobacterium gleum (75%)
4 2521 bp 38.00 3.17 100.79
Displaying items 27101-27150 of 27580 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.