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SCNpilot_expt_750_bf_UNK

In projects: SCNPILOT_EXPT_750_BF

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 8.95 Longest contig: 69.54 Kbp Bin length: 57.41 Mbp GC content: 55.10 %
Contigs count: 27580 Features count: 77384 rRNAs count: 26 tRNAs count: 617

Genome completeness

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 18 / 38 MC: 17
Displaying items 651-700 of 27580 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_bf_scaffold_25965
Species: Rhizobium sp. CF080 (50%)
2 1243 bp 65.89 5.83 100.40
scnpilot_expt_750_bf_scaffold_8291
Order: Xanthomonadales (75%)
4 2746 bp 65.84 4.92 100.40
scnpilot_expt_750_bf_scaffold_12203
Phylum: Proteobacteria (83.33%)
6 4249 bp 67.64 4.12 100.40
scnpilot_expt_750_bf_scaffold_9560
Species: Flavobacterium rivuli (50%)
2 2501 bp 36.51 4.40 100.40
scnpilot_expt_750_bf_scaffold_13058
Genus: Bradyrhizobium (66.67%)
3 2014 bp 65.29 3.72 100.40
scnpilot_expt_750_bf_scaffold_32526
Species: Oceanibaculum indicum (50%)
2 1007 bp 64.35 4.72 100.40
scnpilot_expt_750_bf_scaffold_32546
Species: Pseudoalteromonas arctica (50%)
2 1007 bp 37.93 1.74 100.40
scnpilot_expt_750_bf_scaffold_6625
Species: Chryseobacterium gleum (100%)
3 3780 bp 39.13 4.63 100.40
scnpilot_expt_750_bf_scaffold_13033
Species: Rhizobium sp. UR51a (66.67%)
3 2017 bp 68.77 6.32 100.40
scnpilot_expt_750_bf_scaffold_8118 3 2788 bp 44.73 334.02 100.40
scnpilot_expt_750_bf_scaffold_25230
Species: Alicycliphilus denitrificans (66.67%)
3 1270 bp 68.82 3.15 100.39
scnpilot_expt_750_bf_scaffold_19515
Species: Sphingopyxis sp. MC1 (100%)
4 1524 bp 70.01 3.94 100.39
scnpilot_expt_750_bf_scaffold_32319
Species: Oligotropha carboxidovorans (50%)
2 1016 bp 66.54 4.18 100.39
scnpilot_expt_750_bf_scaffold_32213
Species: Devosia epidermidihirudinis (50%)
2 1019 bp 66.83 4.66 100.39
scnpilot_expt_750_bf_scaffold_9180
Genus: Spirosoma (50%)
4 3323 bp 45.65 4.36 100.39
scnpilot_expt_750_bf_scaffold_19231
Species: Candidatus Caedibacter acanthamoebae (50%)
2 1539 bp 38.01 4.87 100.39
scnpilot_expt_750_bf_scaffold_25484
Species: Devosia sp. 17-2-E-8 (50%)
4 2570 bp 65.06 5.25 100.39
scnpilot_expt_750_bf_scaffold_7950
Genus: Devosia (100%)
4 2830 bp 67.35 5.57 100.39
scnpilot_expt_750_bf_scaffold_10625
Order: Micrococcales (66.67%)
3 2319 bp 70.38 6.90 100.39
scnpilot_expt_750_bf_scaffold_31888
Species: Devosia riboflavina (100%)
2 1031 bp 59.36 6.55 100.39
scnpilot_expt_750_bf_scaffold_31889
Species: Algoriphagus machipongonensis (50%)
2 1031 bp 39.77 3.88 100.39
scnpilot_expt_750_bf_scaffold_24645
Species: Nitratireductor aquibiodomus (66.67%)
3 1291 bp 65.30 5.03 100.39
scnpilot_expt_750_bf_scaffold_31781
Species: Devosia epidermidihirudinis (50%)
2 1034 bp 66.15 3.63 100.39
scnpilot_expt_750_bf_scaffold_31785
Species: marine sediment metagenome (50%)
2 1034 bp 67.60 5.32 100.39
scnpilot_expt_750_bf_scaffold_31709
Species: Paracoccus halophilus (50%)
2 1037 bp 62.30 5.30 100.39
scnpilot_expt_750_bf_scaffold_31721
Species: Streptomyces vietnamensis (50%)
2 1037 bp 76.08 2.89 100.39
scnpilot_expt_750_bf_scaffold_18889
Species: Niastella koreensis (50%)
2 1557 bp 45.92 4.82 100.38
scnpilot_expt_750_bf_scaffold_31609
Species: Agrobacterium tumefaciens (100%)
2 1040 bp 60.96 2.88 100.38
scnpilot_expt_750_bf_scaffold_24326
Domain: Bacteria (66.67%)
3 1303 bp 63.47 3.84 100.38
scnpilot_expt_750_bf_scaffold_23055
Species: CSP1_6_Rokubacteria (100%)
2 2349 bp 62.54 5.00 100.38
scnpilot_expt_750_bf_scaffold_24104
Species: Devosia psychrophila (66.67%)
3 1312 bp 64.10 4.19 100.38
scnpilot_expt_750_bf_scaffold_12321
Species: Agrobacterium tumefaciens (66.67%)
3 2101 bp 66.73 4.88 100.38
scnpilot_expt_750_bf_scaffold_5380
Genus: Bacteroides (50%)
4 3691 bp 39.10 3.39 100.38
scnpilot_expt_750_bf_scaffold_31137
Species: Sphingopyxis sp. MC1 (100%)
2 1055 bp 70.71 6.16 100.38
scnpilot_expt_750_bf_scaffold_31038
Species: Conexibacter woesei (100%)
2 1058 bp 66.26 3.07 100.38
scnpilot_expt_750_bf_scaffold_18294
Species: Pseudonocardia dioxanivorans (100%)
3 1590 bp 76.16 3.46 100.38
scnpilot_expt_750_bf_scaffold_30897
Species: Sphingobium sp. SYK-6 (100%)
2 1064 bp 64.29 3.99 100.38
scnpilot_expt_750_bf_scaffold_30782
Species: Bosea sp. LC85 (100%)
2 1067 bp 65.32 2.58 100.37
scnpilot_expt_750_bf_scaffold_30643
Species: Cupriavidus metallidurans (50%)
2 1073 bp 68.97 3.49 100.37
scnpilot_expt_750_bf_scaffold_30234
Species: Sphingobium sp. SYK-6 (50%)
2 1088 bp 69.12 4.14 100.37
scnpilot_expt_750_bf_scaffold_17433
Species: Rhodobacter sp. SW2 (66.67%)
3 1641 bp 66.00 4.72 100.37
scnpilot_expt_750_bf_scaffold_8337
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 2735 bp 65.52 1071.66 100.37
scnpilot_expt_750_bf_scaffold_30002
Species: Sphingopyxis fribergensis (100%)
2 1097 bp 63.90 4.10 100.37
scnpilot_expt_750_bf_scaffold_13952
Species: Sphingopyxis sp. MC1 (100%)
3 1922 bp 68.00 4.94 100.36
scnpilot_expt_750_bf_scaffold_9102
Species: Rhizobium tropici (100%)
3 3306 bp 62.07 3.25 100.36
scnpilot_expt_750_bf_scaffold_22515
Species: Sphingopyxis sp. MC1 (66.67%)
3 1378 bp 62.84 5.99 100.36
scnpilot_expt_750_bf_scaffold_29843
Species: Alicycliphilus denitrificans (50%)
2 1103 bp 71.89 7.48 100.36
scnpilot_expt_750_bf_scaffold_29848
Species: Devosia limi (50%)
2 1103 bp 66.18 5.21 100.36
scnpilot_expt_750_bf_scaffold_22386
Species: GWF2_Lentisphaerae_52_8_curated (50%)
2 1384 bp 42.85 2.71 100.36
scnpilot_expt_750_bf_scaffold_29668
Species: R_NC10_66_22 (50%)
2 1109 bp 63.30 4.51 100.36
Displaying items 651-700 of 27580 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.