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SCNpilot_expt_750_bf_UNK

In projects: SCNPILOT_EXPT_750_BF

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 8.95 Longest contig: 69.54 Kbp Bin length: 57.41 Mbp GC content: 55.10 %
Contigs count: 27580 Features count: 77384 rRNAs count: 26 tRNAs count: 617

Genome completeness

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 18 / 38 MC: 17
Displaying items 701-750 of 27580 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_bf_scaffold_17120
Species: RLO_Betaproteobacteria_65_14 (66.67%)
3 1665 bp 64.08 6.31 100.36
scnpilot_expt_750_bf_scaffold_29591
Species: Rhodopseudomonas palustris (50%)
2 1112 bp 62.95 3.15 100.36
scnpilot_expt_750_bf_scaffold_29516
Species: Dysgonomonas mossii (100%)
2 1115 bp 36.95 4.26 100.36
scnpilot_expt_750_bf_scaffold_16916
Species: R_OD1_Kaiserbacteria_51_21 (50%)
2 1680 bp 58.75 5.21 100.36
scnpilot_expt_750_bf_scaffold_39122
Species: Acidothermus cellulolyticus (50%)
2 1411 bp 73.49 3.19 100.35
scnpilot_expt_750_bf_scaffold_29093 2 1133 bp 50.57 2.21 100.35
scnpilot_expt_750_bf_scaffold_33175
Order: Rhizobiales (66.67%)
3 1701 bp 56.44 6.17 100.35
scnpilot_expt_750_bf_scaffold_29002
Species: Rhizobium gallicum (100%)
2 1136 bp 57.92 3.96 100.35
scnpilot_expt_750_bf_scaffold_16549
Species: Devosia sp. DDB001 (100%)
3 1707 bp 65.38 5.13 100.35
scnpilot_expt_750_bf_scaffold_9667
Species: Paracoccus halophilus (50%)
4 3136 bp 62.05 3.75 100.35
scnpilot_expt_750_bf_scaffold_10881
Genus: Rhodanobacter (75%)
4 2284 bp 70.88 5.14 100.35
scnpilot_expt_750_bf_scaffold_28774
Species: Agrobacterium tumefaciens (100%)
2 1145 bp 60.17 3.06 100.35
scnpilot_expt_750_bf_scaffold_32675
Genus: Rhizobium (66.67%)
3 1719 bp 63.53 3.20 100.35
scnpilot_expt_750_bf_scaffold_28580
Species: Martelella endophytica (50%)
2 1151 bp 67.59 5.86 100.35
scnpilot_expt_750_bf_scaffold_13051
Species: Agrobacterium tumefaciens (66.67%)
3 2015 bp 64.27 4.22 100.35
scnpilot_expt_750_bf_scaffold_22901
Species: Shinella sp. DD12 (50%)
6 2592 bp 56.67 5.21 100.35
scnpilot_expt_750_bf_scaffold_28500
Species: Oleiagrimonas soli (100%)
2 1154 bp 67.59 4.77 100.35
scnpilot_expt_750_bf_scaffold_28505
Order: Sphingomonadales (66.67%)
3 1154 bp 65.77 7.37 100.35
scnpilot_expt_750_bf_scaffold_16155
Species: Hyphomicrobium sp. MC1 (50%)
2 1734 bp 67.53 5.48 100.35
scnpilot_expt_750_bf_scaffold_16120
Species: Sphingobium sp. SYK-6 (66.67%)
3 1737 bp 65.75 3.89 100.35
scnpilot_expt_750_bf_scaffold_4661
Class: Alphaproteobacteria (50%)
4 4063 bp 65.10 4.37 100.35
scnpilot_expt_750_bf_scaffold_16026
Species: Dyadobacter fermentans (100%)
2 1743 bp 41.88 5.02 100.34
scnpilot_expt_750_bf_scaffold_7651
Genus: Mesorhizobium (100%)
3 2912 bp 67.24 5.49 100.34
scnpilot_expt_750_bf_scaffold_12819
Order: Rhizobiales (100%)
3 2042 bp 66.55 3.80 100.34
scnpilot_expt_750_bf_scaffold_5803
Domain: Bacteria (50%)
4 3510 bp 29.77 3.42 100.34
scnpilot_expt_750_bf_scaffold_7485
Species: Devosia sp. DDB001 (60%)
5 3839 bp 66.11 4.43 100.34
scnpilot_expt_750_bf_scaffold_12538
Species: Rhodanobacter spathiphylli (66.67%)
3 2075 bp 65.78 6.63 100.34
scnpilot_expt_750_bf_scaffold_15556
Class: Betaproteobacteria (66.67%)
3 1779 bp 66.33 4.50 100.34
scnpilot_expt_750_bf_scaffold_27382
Species: Moorea producens (50%)
2 1193 bp 31.85 2.51 100.34
scnpilot_expt_750_bf_scaffold_29315
Species: Afipia broomeae (66.67%)
3 1794 bp 60.93 4.18 100.33
scnpilot_expt_750_bf_scaffold_26683
Species: Pseudonocardia dioxanivorans (100%)
2 1217 bp 74.28 3.08 100.33
scnpilot_expt_750_bf_scaffold_14787
Class: Alphaproteobacteria (66.67%)
3 1845 bp 61.79 4.61 100.33
scnpilot_expt_750_bf_scaffold_26269
Species: Rhizobium sp. CF122 (50%)
2 1232 bp 65.34 3.86 100.33
scnpilot_expt_750_bf_scaffold_19054
Phylum: Proteobacteria (66.67%)
3 1549 bp 53.07 2.74 100.32
scnpilot_expt_750_bf_scaffold_11312
Class: Actinobacteria (50%)
6 4656 bp 60.93 3.06 100.32
scnpilot_expt_750_bf_scaffold_14492
Species: Dyadobacter fermentans (100%)
3 1872 bp 47.38 3.34 100.32
scnpilot_expt_750_bf_scaffold_14468
Species: Dysgonomonas mossii (100%)
2 1875 bp 38.40 3.07 100.32
scnpilot_expt_750_bf_scaffold_25305
Species: Mesorhizobium sp. STM 4661 (50%)
2 1268 bp 63.88 3.55 100.32
scnpilot_expt_750_bf_scaffold_45889
Species: Mycobacterium smegmatis (50%)
2 1274 bp 73.08 5.49 100.31
scnpilot_expt_750_bf_scaffold_38482
Species: Rhodanobacter thiooxydans (50%)
2 1280 bp 62.66 8.59 100.31
scnpilot_expt_750_bf_scaffold_24878
Species: Sphingomonas sanxanigenens (50%)
2 1283 bp 62.35 3.90 100.31
scnpilot_expt_750_bf_scaffold_10964
Order: Rhizobiales (100%)
3 2273 bp 63.66 4.51 100.31
scnpilot_expt_750_bf_scaffold_24374
Species: Legionella drancourtii (50%)
2 1301 bp 35.82 2.50 100.31
scnpilot_expt_750_bf_scaffold_23374
Order: Rhizobiales (66.67%)
3 1956 bp 61.91 4.35 100.31
scnpilot_expt_750_bf_scaffold_10896
Genus: Flavobacterium (100%)
3 2282 bp 40.10 4.16 100.31
scnpilot_expt_750_bf_scaffold_6231
Species: Microvirga lotononidis (50%)
4 3924 bp 64.25 4.84 100.31
scnpilot_expt_750_bf_scaffold_24146
Species: Candidatus Caedibacter acanthamoebae (50%)
2 1310 bp 37.71 3.24 100.31
scnpilot_expt_750_bf_scaffold_23553
Species: Thauera terpenica (50%)
2 1334 bp 71.21 4.87 100.30
scnpilot_expt_750_bf_scaffold_32684
Species: Chlamydia trachomatis (50%)
2 1002 bp 70.36 2.50 100.30
scnpilot_expt_750_bf_scaffold_23466
Species: Pseudonocardia dioxanivorans (100%)
2 1337 bp 70.38 4.30 100.30
Displaying items 701-750 of 27580 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.