ggKbase home page

scnpilot_expt_750_bf_scaffold_2552_4

Organism: SCNPILOT_EXPT_750_BF_Thiobacillus_SCN1_63_220

near complete RP 48 / 55 MC: 7 BSCG 48 / 51 MC: 7 ASCG 13 / 38 MC: 2
Location: 3346..4524

Top 3 Functional Annotations

Value Algorithm Source
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=292415 specie similarity UNIPROT
DB: UniProtKB
  • Identity: 89.5
  • Coverage: 419.0
  • Bit_score: 726
  • Evalue 2.40e-206
rho; transcription termination factor Rho; K03628 transcription termination factor Rho id=12495252 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 91.9
  • Coverage: 420.0
  • Bit_score: 740
  • Evalue 8.80e-211
rho; transcription termination factor Rho similarity KEGG
DB: KEGG
  • Identity: 89.5
  • Coverage: 419.0
  • Bit_score: 726
  • Evalue 4.90e-207

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Thiobacillus denitrificans → Thiobacillus → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1179
ATGCATCTTTCCGAACTCAAGCAGAAACCCATCACCGAGCTTCTCGAAATCGCCGCCGCCAGCGGGATCGACAATGCCAACCGTTTTCGCAAGCAGGAACTGATCTTCACCATCCTGAAGACGCTGGCCAAGCGCGGCGAAAGCATCTACGGCGATGGGGTGCTGGAAGTGCTGCCGGATGGCTTCGGATTCCTGCGGTCGCCGGAGTCCTCGTATCTCGCCAACACCGACGACATCTATGTGTCGCCCTCGCAGATCCGCCGCTTCAACCTGCACACCGGCGACAAGATCGAAGGCGAGATCCGCACCCCCAAGGACGGCGAACGCTATTCGGCGATGACCAAGCTCGACCTGATCAACGGCGAGCCGCCCGAAGCGAGCAAGAACAAGATCCTGTTCGAGAACCTGACCCCGCTGCACCCGGACAAGCCGCTCAAGCTGGAGCGCGACATCAAGGCGGAGGAAAACATCACCAGCCGCGTCATCGACATCGTCGCGCCCATCGGCAAAGGCCAGCGCGGCTTGCTGGTGGCGCCGCCGAAGTCCGGCAAGACGGTGATGCTGCAGCACATCGCCCACGCCATCACCTCCAACCATCCCGACGTCGTGCTGTTCGTGCTGCTGATCGACGAGCGCCCGGAAGAAGTCACCGAGATGAGCCGCACCGTGCGGCGCCTGGTCGAACACAAGAAGGACGTGGTGATTCTGCTCGACTCGATCACCCGTCTGGCGCGTGCCTACAATACCGTGCAGCCGGCCTCCGGCAAGGTGCTTACCGGCGGCGTCGACGCCAACGCGCTGCAGAAGCCCAAGCGCTTCTTCGGTGCCGCGCGCAACATCGAGGAAGGCGGCAGCCTCACCATTCTCGCCACCACGCTGGTCGATACCGGCAGCCGCATGGACGACGTGATCTACGAGGAATTCAAGGGCACCGGCAACCTGGAAATCCACCTCGACCGCAAGATGGCCGAGAAGCGCCAGTATCCGGCGATCAACGTCAACCGTTCCGGCACCCGCCGCGAAGAACTGCTGATGCCGCACGACATCCTGCAGAAGGTATGGGTGCTGAGGAAGCTGCTCTACCCGATGGACGACATGGAAGCGATGGAGTTTCTGCTCGACAAGATCCGCGCGACGAAGAACAACAACGAGTTCTTCGATTCGATGCGTCGGGGATGA
PROTEIN sequence
Length: 393
MHLSELKQKPITELLEIAAASGIDNANRFRKQELIFTILKTLAKRGESIYGDGVLEVLPDGFGFLRSPESSYLANTDDIYVSPSQIRRFNLHTGDKIEGEIRTPKDGERYSAMTKLDLINGEPPEASKNKILFENLTPLHPDKPLKLERDIKAEENITSRVIDIVAPIGKGQRGLLVAPPKSGKTVMLQHIAHAITSNHPDVVLFVLLIDERPEEVTEMSRTVRRLVEHKKDVVILLDSITRLARAYNTVQPASGKVLTGGVDANALQKPKRFFGAARNIEEGGSLTILATTLVDTGSRMDDVIYEEFKGTGNLEIHLDRKMAEKRQYPAINVNRSGTRREELLMPHDILQKVWVLRKLLYPMDDMEAMEFLLDKIRATKNNNEFFDSMRRG*