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scnpilot_expt_750_bf_scaffold_2105_2

Organism: SCNPILOT_EXPT_750_BF_Thiobacillus_SCN1_63_220

near complete RP 48 / 55 MC: 7 BSCG 48 / 51 MC: 7 ASCG 13 / 38 MC: 2
Location: comp(1119..2609)

Top 3 Functional Annotations

Value Algorithm Source
secretion protein HlyD; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB id=12493409 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 97.6
  • Coverage: 497.0
  • Bit_score: 943
  • Evalue 6.60e-272
  • rbh
secretion protein HlyD similarity KEGG
DB: KEGG
  • Identity: 59.7
  • Coverage: 496.0
  • Bit_score: 548
  • Evalue 2.30e-153
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:EJM62847.1}; Flags: Precursor;; TaxID=1144330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Ps similarity UNIPROT
DB: UniProtKB
  • Identity: 58.1
  • Coverage: 494.0
  • Bit_score: 548
  • Evalue 8.70e-153

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Taxonomy

Pseudomonas sp. GM48 → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1491
ATGAAACCGATGATGAAAGTCCTGACCGCCGGCATGGTGGCCGGCGCACTGCTGGCGCTGGGCGCGGGCGGCGGCTGGTGGTGGGCCCAGCGCACCGCGGCAGGCAAGCCGGTCGCCGGCCCGCAATCTGCCGCATCGCAAGACAGTCGCCGCGTGCTGTACTGGTACGACCCCATGATGCCGCAGCAGCACTTCGACAAACCGGGAAAGTCGCCCTTCATGGACATGGCGCTGGTGCCCCGATACGCCGACGAGGCGGCCGGCGACAACGGTGTCAGGATCGACCCAAGCGTCATGCAGAACCTCGGCATGCGCCTGGCGAGCGTCGAGCGCATTGCGCTGGCGACACGGGTCGACGCGAGCGGGTTGATCGGATTCAACGAACGTGACGTCGCCATCGTACAGGCCCGCAGCGGCGGATTCGTCGAACGGGTGTGGCCGCTGGCGCCCGGTGATGTGGTCCGCACGGGGCAGCCGCTGGTCAGCCTGCTGGTGCCGGAATGGGCCGCGGCGCAGCACGAGCTGCTGGCGATCCGCGCGGCGGGCGATCCCGCGTTGCTGGCGGCGGCGCGCGAGCGCCTGCGCCTGCTGGGCATGCCGGATGAACTGATCCGCCGCGTCGAGCAGCGCGGCGAGCCGCAACCGCGCTTCACCGTGAACCTGCCGCGCGGTGGCCTGCTGCAATCGCTCGAGGTACGCGCCGGCATGACGATCGCATCCGGCCAGACGCTCGCGCGCGTGAACGGCTTGAGCACAGTCTGGCTCGATGTCGCGGTGCCGCAAGCCTACGCCACCTGGGTGCATCCCGGCGTGCGCGCCGAGGCCCGGCTGGCCGGCTTCCCGGACAAAATCATCAGCGGCCGCGTCAGCGCGATCCTGCCTGTACTCGACGCGGCAGCGCGCAGCCTGCAGGTGCGCGTCGAACTGCCGAACGCGGATGGCCGGCTGCGCCCGGGGCTCTCGGCCCAGGTGCAACTGATTTCCGACACGCACGGCAGCGCGCTGGCAGTCCCGTCCGAGGCAGTGATCCGCACCGGCAAGCGTGCGCTGGTCATGCTGGCCGGCGAGAACGGCCACTTCACACCGGTCGAGGTCACACCCGGCATCGAGGTCGGCGAACGCACGGTCATCGAATCCGGATTGGAGGAAGGTCAGAAGATCGTCGCCAGCGGCCAGTTCCTGCTCGACTCCGAAGCCAGCCTCAGCGGCGTCGCAACCGGCGCGGAAGGCGACGCCACCACGCGCGCCCCCGCAGGCGTCACCCTCCATTCTGCCGAAGCGGAGATCGACGAGATCGGCGCCGATGAAATCACCCTGTCCCACGGACCGTTCAAGACCCTGTCGATGTCCGGCATGACCATGGTCTTTCCGCTCGCCAGACCGGGGCTGGCGAAAGGTCTGAAGGCGGGTGACCGGGTCACGGTTTTCGTTCGCCAGACCGACCAGGGCCTCGTCGTCGAACGCCTGGACAAGACCGGAGCCCGGCCATGA
PROTEIN sequence
Length: 497
MKPMMKVLTAGMVAGALLALGAGGGWWWAQRTAAGKPVAGPQSAASQDSRRVLYWYDPMMPQQHFDKPGKSPFMDMALVPRYADEAAGDNGVRIDPSVMQNLGMRLASVERIALATRVDASGLIGFNERDVAIVQARSGGFVERVWPLAPGDVVRTGQPLVSLLVPEWAAAQHELLAIRAAGDPALLAAARERLRLLGMPDELIRRVEQRGEPQPRFTVNLPRGGLLQSLEVRAGMTIASGQTLARVNGLSTVWLDVAVPQAYATWVHPGVRAEARLAGFPDKIISGRVSAILPVLDAAARSLQVRVELPNADGRLRPGLSAQVQLISDTHGSALAVPSEAVIRTGKRALVMLAGENGHFTPVEVTPGIEVGERTVIESGLEEGQKIVASGQFLLDSEASLSGVATGAEGDATTRAPAGVTLHSAEAEIDEIGADEITLSHGPFKTLSMSGMTMVFPLARPGLAKGLKAGDRVTVFVRQTDQGLVVERLDKTGARP*