ggKbase home page

scnpilot_expt_750_bf_scaffold_251_26

Organism: SCNPILOT_EXPT_750_BF_Variovorax_67_130

near complete RP 51 / 55 MC: 2 BSCG 51 / 51 MC: 1 ASCG 14 / 38 MC: 2
Location: comp(35128..36303)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003806101 similarity UNIREF
DB: UNIREF100
  • Identity: 78.6
  • Coverage: 401.0
  • Bit_score: 642
  • Evalue 3.30e-181
  • rbh
Type VI secretion protein, VC_A0111 family {ECO:0000313|EMBL:EJL76661.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Vario similarity UNIPROT
DB: UniProtKB
  • Identity: 79.6
  • Coverage: 387.0
  • Bit_score: 639
  • Evalue 3.00e-180
type VI secretion protein similarity KEGG
DB: KEGG
  • Identity: 81.2
  • Coverage: 373.0
  • Bit_score: 626
  • Evalue 6.80e-177
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1176
ATGAGCGAAGAAGGCTTCACCGACGACATGGCGGCCCTGCCGGTCAGCGACGGCGAGGCTGAACAGGACAACGCGGCCGACGTCTGCTACAGCATCCCGCAGTCGCTGCAGGCCACGCCGTTGCCGCGCGGCCTGCCCGAGGCCGACCCCGAACTCTGGGCGCAACTGCTCGACCAGCCTTTCGGGCACGACCTGTTCATGCTGCTGCGCCGGCTCGATGCGCGAAGCGACCATCCGCTGCTCGGCCGCGCGCCGCGCCCCGTCGACGAGCCGCTGCGGCTGGGGCAGGAGCCCTCGATGGCCTTCGCGCCGTCGAACGTGGCGGGCGTCGATGCGTCGCAGGACGGGCCGCCGCGCATCTCGATCTACGGCTTCGGCCTGTTCGGTCCCAACGGCCCGCTGCCGCTGCACATGACCGAGTACGCGCGCGAGCGCAAGCGCCACCATGCCGACGACACGCTGAGCGCATTCGCCGACCTGTTCCATCACCGGCTCATCCTGCTGTTCTACCGGGCCTGGGCCGATGCGCAGTCGGTCAACAGCCTGGACCGCCCCGACGGCCATCGTTTCGTCGACTACGTTGCCAGCCTCATGAACATGGGGCAGCCGGGCCTCAAGGGGCGCGACCGCATCGCCGACCATGCGCGCACCTTCATGGCCGGCCACCTCGTGCGCCAGACGCGCAACCCCGAGGGATTGATACAGATCCTGCGGCTCTACTTCGACGTGCCGGTGCGCATCGAGGAGTTCGTGAGCGACTGGGTGCGCATCGACGAGCGCCAGCTCAGCACGCTCGGCTTCTCCGGCCGCAACCACCAGCTGGGCGGCGGCGCCACCGTCGGCATTGCGGTGCGCGATGCGCAGAGCAAGTTCCGCGTCGAGCTTGGTCCGCTGTCGCAACAGGAGTTCCAGGAACTGCTGCCGGGCAGCAAGCGGCTGCGGCAGGTGGTCGACTGGGTGCGGCAATACGTGGGCATCGAGTTCGCGTGGGAGCTGCGGCTCGTGCTGCGCAAGCAGGACGCCCATGGCATGCAGCTCGGCGCCGGGCAGCAGCTCGGCTGGGGCAGCTGGCTCGGCACGCGCCTGGCCGACACCGACGCCGGCGACATGGTGTTCCAGCCCGAGGCTTTGTTTTCCCGTTCCGCATCTGCGGCTTCCGCCAACTCAAGTTCATGA
PROTEIN sequence
Length: 392
MSEEGFTDDMAALPVSDGEAEQDNAADVCYSIPQSLQATPLPRGLPEADPELWAQLLDQPFGHDLFMLLRRLDARSDHPLLGRAPRPVDEPLRLGQEPSMAFAPSNVAGVDASQDGPPRISIYGFGLFGPNGPLPLHMTEYARERKRHHADDTLSAFADLFHHRLILLFYRAWADAQSVNSLDRPDGHRFVDYVASLMNMGQPGLKGRDRIADHARTFMAGHLVRQTRNPEGLIQILRLYFDVPVRIEEFVSDWVRIDERQLSTLGFSGRNHQLGGGATVGIAVRDAQSKFRVELGPLSQQEFQELLPGSKRLRQVVDWVRQYVGIEFAWELRLVLRKQDAHGMQLGAGQQLGWGSWLGTRLADTDAGDMVFQPEALFSRSASAASANSSS*