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scnpilot_expt_750_bf_scaffold_251_27

Organism: SCNPILOT_EXPT_750_BF_Variovorax_67_130

near complete RP 51 / 55 MC: 2 BSCG 51 / 51 MC: 1 ASCG 14 / 38 MC: 2
Location: comp(36300..38171)

Top 3 Functional Annotations

Value Algorithm Source
Type VI secretion protein, VC_A0110 family n=1 Tax=Variovorax sp. CF313 RepID=J2TEE5_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 96.3
  • Coverage: 623.0
  • Bit_score: 1205
  • Evalue 0.0
  • rbh
Type VI secretion protein, VC_A0110 family {ECO:0000313|EMBL:EJL76662.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va similarity UNIPROT
DB: UniProtKB
  • Identity: 96.3
  • Coverage: 623.0
  • Bit_score: 1205
  • Evalue 0.0
type VI secretion protein similarity KEGG
DB: KEGG
  • Identity: 94.7
  • Coverage: 626.0
  • Bit_score: 1191
  • Evalue 0.0

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Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1872
ATGGATGCGCGGCTGCTCGATTACTACAACCGCGAATTGACCTATATGCACGAGCTCGGAGCCGAGTTCGCGCAGCGCTATCCCAAGATCGCGGGCCGCCTCGGCATGCGCGGCATCGAGGTCAGCGACCCGTATGTCGAGCGCCTGCTCGAAGGCTTCAGCTTTCTCACCGCGCGCATCCAGCTCAAGATGGACGCGGAGTTTCCGCGCTTCTCGCAGCGGTTGCTCGAGGTGGTGTACCCCAACTTTCTCGCGCCGCTGCCCGCGATGGCGGTGGTGCAGATCGACGGCAACCTCAACGAAGGTTCGCTGAAGGCCGGCTACGAGCTGCCGCGCCACACCATCCTGCGCGGCCGCATGATCAAGGGCGAGCAGACGGCCTGCGAGTTCCGCACCGGCCACGCCGTCACGCTGTGGCCCGTGCGCATTGCCGACGCCGGCATCGGCCCGGTGCCGGCGGAAATCGCGCATGCCATGCCGGCGGTCGCGCGGCAGGCCAAGAGCGCGCTCACCATCCGGATCGAAGCGGTGGGCGGTGCGCGCTTTTCGGAAATGCCGATCGAGCGGCTCGAGTTCTTCCTGTCGGGCGCCGAGCTGCATGCGCTGCGCGTGCTCGAACTGGTGGCGCACCATGCCGTGGGCACCGTGTGCCGCAGCGGCCCCGGCGGCAACGCGCGCATCGTGCCGCTCGGCGACGATGCCATTCGTCACGAAGGCTTTTCGCCCGACCAGGCACTGCTGCCTTACGACGCGCGTTCGTTCCAGGGCTACCGCCTGCTGCACGAGTACTTCGCCTTCCCTGATCGCTACCTGTTCTTCAGCGTCAACAAGCTGCGCGCGGCGGCGCAGGCCATGAGCGGCAGCACGATGGAGATCGTGATCCTGCTCGACCGCGCCGATGCCGACCTCGAGCGGCTGGTCGATGCCAAGCACTTTTCGCTGTTCTGCACGCCCATCATCAACCTCGTGCCGCGCCGCAGCGACCGCATCCCGGTCGGTCCGGGTCAGCACGAGCACCATGCGGTGATCGACCGCACGCGGCCGCGCGACTTCGAAATATTCACCGTCGAGCGTGTCACCGGCCACATGGCCAATGGCTCGGAAGAGCGCGAGTTCCGTCCCTTCCTCGGGTCGTTCGCGGCCGACGACGGCGACTTCGGCGCCTACTTCTCGCTGCGCCGCGAGCCGCGCCTGGTGTCGGACCGTGCCCGCGCGCAAGGCACGCGCACCAGCTACACCGGCAGCGAGGTGTACGTGTCGTTGGTCGACCAGCACGATGCGCCGTTTCCGCACAGCCTGCGCCACATCACGCTCGACGCGCTGTGCACCAACCGCGATTTGCCGCTGCTCTTGCCGACCGGGCTCGAATCCGATTTCACGCTGCGCGTTTCGGCGCCGGTGCGGTCTATCCGCATCCTGCGCGGCCCCTCACGGCCCTATCCCGCGCTGGCCGAGGGCGCGCTGACGTGGCGGCTCATCAGCCACCTCGGCCTCAACTACCTGAGCCTGACCGACGTCGATGCGGCGCAGGGCGCGGCCGCGCTGCGCGAGATGCTCGACCTCTACGGCAACCTGGCCGATCCTTCGGTGCGCCGGCAGATCCAGGGCGTGCGGTCGATGGCGCTCGCGCCGGTGTTCCGCCGCCTGCCCGAGCCCGGGCCGATCGTGTTCGGGCGCGGCGTGGAGATTGCGCTGAAGATCGACGAGGTCGCGTTCTCCGGCGCGAGCCCGTACCTCTTCGGCGCCGTGCTGGAGCAGTTCTTCAGCCGCCACGTGTCGCTCAACGCATTCACCGAATTCGCGCTGTCCAGCCTGCAGCGCGGAGAAATCGCGCGCTGGACTCCCCGCGTGGGACGCCGCCCCGCCGTATGA
PROTEIN sequence
Length: 624
MDARLLDYYNRELTYMHELGAEFAQRYPKIAGRLGMRGIEVSDPYVERLLEGFSFLTARIQLKMDAEFPRFSQRLLEVVYPNFLAPLPAMAVVQIDGNLNEGSLKAGYELPRHTILRGRMIKGEQTACEFRTGHAVTLWPVRIADAGIGPVPAEIAHAMPAVARQAKSALTIRIEAVGGARFSEMPIERLEFFLSGAELHALRVLELVAHHAVGTVCRSGPGGNARIVPLGDDAIRHEGFSPDQALLPYDARSFQGYRLLHEYFAFPDRYLFFSVNKLRAAAQAMSGSTMEIVILLDRADADLERLVDAKHFSLFCTPIINLVPRRSDRIPVGPGQHEHHAVIDRTRPRDFEIFTVERVTGHMANGSEEREFRPFLGSFAADDGDFGAYFSLRREPRLVSDRARAQGTRTSYTGSEVYVSLVDQHDAPFPHSLRHITLDALCTNRDLPLLLPTGLESDFTLRVSAPVRSIRILRGPSRPYPALAEGALTWRLISHLGLNYLSLTDVDAAQGAAALREMLDLYGNLADPSVRRQIQGVRSMALAPVFRRLPEPGPIVFGRGVEIALKIDEVAFSGASPYLFGAVLEQFFSRHVSLNAFTEFALSSLQRGEIARWTPRVGRRPAV*