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scnpilot_expt_750_bf_scaffold_758_4

Organism: SCNPILOT_EXPT_750_BF_Rhizobiales_65_15

near complete RP 50 / 55 BSCG 49 / 51 MC: 1 ASCG 12 / 38 MC: 1
Location: comp(2455..3030)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7CB79_METED similarity UNIREF
DB: UNIREF100
  • Identity: 54.5
  • Coverage: 191.0
  • Bit_score: 200
  • Evalue 1.20e-48
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:KFC74319.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bo similarity UNIPROT
DB: UniProtKB
  • Identity: 62.2
  • Coverage: 180.0
  • Bit_score: 221
  • Evalue 9.40e-55
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 54.5
  • Coverage: 191.0
  • Bit_score: 200
  • Evalue 3.50e-49

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Taxonomy

Bosea sp. LC85 → Bosea → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 576
ATGCTCGCGCTCGAACGTCTCTCACCGCTGGAGCGGGCCGCTTTCCTGCTGTACGACATCTTCGACCGGCCCTTCGCCGAGGTGGCCGAGACACTGGAGCGCAGCGAGGCCGCCTGCCGCCAGCTTGTCTCACGCGCTCGGCGGCATGTGCAGGAGGACGGCGCCCGCCACAAGCTTCCGCCGGAAGAGGCACGGCGCTATGCCACCGCCTTCTTCGAGGCTGCGCACAGCACCGACCCGACCGCGCTCAGGCAGCTTCTGGCCCGCGATGCCATCCTGCATACCGATGGCGGCGGCAAGGTTACCGCCACGCTGAATCCGATCTTCGGCGCCGAGAAGATCGGCCGCTTCTTCGCAGGGCTGGCGCGCAAGCTCCACCAGGCCGGGCAGGAAGCCGCATTCTTTCAGCCGGTGCTGATCGACGGCCTGCCAGGCTATCTCAGCCTGGAGCGAGGCGGCACCATTCAGGCGACCGCCCTCGACATCCGCGACAGCCACATCGTGGCCGTCTATGTCATACGCAACCCGGAAAAGCTCGGACGCGCGGCGGATATTTTGACCCGGGCTGCCGGCTAG
PROTEIN sequence
Length: 192
MLALERLSPLERAAFLLYDIFDRPFAEVAETLERSEAACRQLVSRARRHVQEDGARHKLPPEEARRYATAFFEAAHSTDPTALRQLLARDAILHTDGGGKVTATLNPIFGAEKIGRFFAGLARKLHQAGQEAAFFQPVLIDGLPGYLSLERGGTIQATALDIRDSHIVAVYVIRNPEKLGRAADILTRAAG*