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SCNPILOT_EXPT_750_P_Bacteroidia_45_5.3_partial

SCNPILOT_EXPT_750_P_Bacteroidales_45_6
In projects: SCNPILOT_EXPT_750_P  |  SCN_92

Consensus taxonomy: Bacteroidales  →  Bacteroidia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_750_p_UNK Curated version: scnpilot_dereplicated_Bacteroidales_2

Properties

Avg. coverage: 5.66 Longest contig: 28.04 Kbp Bin length: 3.86 Mbp GC content: 44.99 %
Contigs count: 907 Features count: 3765 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 45 / 55 MC: 1 BSCG 45 / 51 MC: 3 ASCG 13 / 38 MC: 3

Description

highly fragmented

Displaying items 651-700 of 907 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_p_scaffold_35405
Species: Dysgonomonas gadei (100%)
2 1418 bp 41.61 4.58 98.80
scnpilot_expt_750_p_scaffold_29391
Species: Bacteroides xylanisolvens (50%)
2 1588 bp 43.20 6.30 98.43
scnpilot_expt_750_p_scaffold_7664
Species: Coprobacter fastidiosus (50%)
2 4047 bp 49.69 4.45 98.74
scnpilot_expt_750_p_scaffold_28568
Species: Dysgonomonas gadei (50%)
2 1616 bp 47.96 4.95 80.20
scnpilot_expt_750_p_scaffold_35664
Species: Parabacteroides goldsteinii (50%)
2 1412 bp 38.81 3.19 92.85
scnpilot_expt_750_p_scaffold_59379
Species: R_Acidobacteria_65_29 (50%)
2 1044 bp 43.77 2.87 100.00
scnpilot_expt_750_p_scaffold_21945
Species: Dysgonomonas mossii (50%)
2 1905 bp 48.24 4.46 91.65
scnpilot_expt_750_p_scaffold_46885
Species: Bacteroides fragilis (50%)
2 1201 bp 44.13 5.00 80.18
scnpilot_expt_750_p_scaffold_13731
Species: Dysgonomonas gadei (50%)
2 2600 bp 49.15 4.62 96.69
scnpilot_expt_750_p_scaffold_29651
Species: Odoribacter laneus (50%)
2 1578 bp 42.71 4.59 56.65
scnpilot_expt_750_p_scaffold_63151
Species: Bacteroides thetaiotaomicron (50%)
2 1005 bp 37.41 2.99 93.43
scnpilot_expt_750_p_scaffold_48352
Species: Bacteroides uniformis CAG:3 (50%)
2 1179 bp 40.80 5.73 59.29
scnpilot_expt_750_p_scaffold_45592
Species: Alistipes indistinctus (50%)
2 1221 bp 50.20 3.07 102.70
scnpilot_expt_750_p_scaffold_7678
Species: Odoribacter splanchnicus (50%)
2 4041 bp 48.11 5.51 96.88
scnpilot_expt_750_p_scaffold_28582
Species: R_RIF_OD1_03_48_11 (50%)
2 1615 bp 34.74 2.32 93.25
scnpilot_expt_750_p_scaffold_30930
Species: Paludibacter propionicigenes (50%)
2 1538 bp 50.00 6.01 97.33
scnpilot_expt_750_p_scaffold_33980
Species: Dysgonomonas gadei (50%)
2 1454 bp 45.32 6.19 92.23
scnpilot_expt_750_p_scaffold_8269
Species: Dysgonomonas gadei (100%)
2 3812 bp 43.18 8.92 99.87
scnpilot_expt_750_p_scaffold_31805
Species: RLO_Flavobacteria_35_11 (50%)
2 1512 bp 45.30 5.46 103.77
scnpilot_expt_750_p_scaffold_14330
Species: Dysgonomonas mossii (50%)
2 2525 bp 47.29 5.94 90.65
scnpilot_expt_750_p_scaffold_8532
Species: Geofilum rubicundum (100%)
2 3710 bp 44.88 5.66 97.68
scnpilot_expt_750_p_scaffold_17268
Species: Odoribacter splanchnicus (50%)
2 2225 bp 48.31 4.72 91.42
scnpilot_expt_750_p_scaffold_25925
Species: Dysgonomonas mossii (50%)
2 1715 bp 43.09 9.33 70.67
scnpilot_expt_750_p_scaffold_11119
Species: Dysgonomonas gadei (50%)
2 3032 bp 47.20 6.18 90.93
scnpilot_expt_750_p_scaffold_23751
Species: Dysgonomonas gadei (100%)
2 1812 bp 45.81 6.48 78.81
scnpilot_expt_750_p_scaffold_27511
Species: Dysgonomonas gadei (100%)
2 1654 bp 46.67 4.69 95.04
scnpilot_expt_750_p_scaffold_14080
Species: Dysgonomonas mossii (50%)
2 2557 bp 46.34 6.84 72.51
scnpilot_expt_750_p_scaffold_19881
Species: Bacteroides sp. 3_1_19 (50%)
2 2028 bp 30.77 5.67 93.05
scnpilot_expt_750_p_scaffold_21979
Species: Porphyromonas gingivalis (100%)
2 1903 bp 29.22 4.86 100.11
scnpilot_expt_750_p_scaffold_9324
Species: Bacteroides ovatus (50%)
2 3459 bp 42.67 6.58 93.15
scnpilot_expt_750_p_scaffold_55880
Species: Dysgonomonas gadei (100%)
2 1083 bp 47.09 4.62 87.53
scnpilot_expt_750_p_scaffold_11638
Species: Parabacteroides goldsteinii (50%)
2 2933 bp 43.57 6.22 94.51
scnpilot_expt_750_p_scaffold_22927
Species: Tannerella forsythia (50%)
2 1853 bp 39.72 3.24 75.61
scnpilot_expt_750_p_scaffold_17535
Species: RBG_16_Gallionellales_56_9_curated (50%)
2 2201 bp 59.47 6.59 69.11
scnpilot_expt_750_p_scaffold_32712
Species: Porphyromonas sp. COT-108 OH1349 (50%)
2 1487 bp 42.43 6.72 67.38
scnpilot_expt_750_p_scaffold_24720
Species: Dysgonomonas gadei (50%)
2 1769 bp 45.00 3.96 80.72
scnpilot_expt_750_p_scaffold_27777
Species: Dysgonomonas gadei (50%)
2 1644 bp 43.61 5.47 84.49
scnpilot_expt_750_p_scaffold_54348
Species: Porphyromonadaceae bacterium ING2-E5B (50%)
2 1101 bp 47.87 5.90 96.46
scnpilot_expt_750_p_scaffold_5498
Species: GWE2_Bacteroidetes_40_63_curated (50%)
2 5408 bp 45.32 6.47 92.09
scnpilot_expt_750_p_scaffold_24723
Species: Mucinivorans hirudinis (50%)
2 1769 bp 41.10 3.96 50.54
scnpilot_expt_750_p_scaffold_13004
Species: Bacteroides vulgatus (50%)
2 2708 bp 43.87 5.63 99.15
scnpilot_expt_750_p_scaffold_19892
Species: Porphyromonas gingivalis (50%)
2 2028 bp 45.02 5.30 64.50
scnpilot_expt_750_p_scaffold_15949
Species: Dysgonomonas mossii (100%)
2 2353 bp 49.30 8.50 96.01
scnpilot_expt_750_p_scaffold_19638
Species: Dysgonomonas gadei (100%)
2 2045 bp 46.21 3.42 96.82
scnpilot_expt_750_p_scaffold_53489
Species: Bacteroides cellulosilyticus CAG:158 (50%)
2 1111 bp 36.36 2.70 73.45
scnpilot_expt_750_p_scaffold_12927
Species: Bacteroides sp. CAG:633 (50%)
2 2719 bp 49.65 4.41 99.85
scnpilot_expt_750_p_scaffold_32208
Species: Barnesiella viscericola (50%)
2 1501 bp 42.97 5.50 81.15
scnpilot_expt_750_p_scaffold_9592
Species: Dysgonomonas gadei (50%)
2 3385 bp 42.04 5.54 72.14
scnpilot_expt_750_p_scaffold_41626
Species: Prevotella buccae (50%)
2 1288 bp 39.13 3.11 33.54
scnpilot_expt_750_p_scaffold_14099
Species: Bacteroides sp. D2 (50%)
2 2554 bp 45.34 5.38 90.92
Displaying items 651-700 of 907 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.