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SCNPILOT_EXPT_750_P_Bacteroidia_45_5.3_partial

SCNPILOT_EXPT_750_P_Bacteroidales_45_6
In projects: SCNPILOT_EXPT_750_P  |  SCN_92

Consensus taxonomy: Bacteroidales  →  Bacteroidia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_750_p_UNK Curated version: scnpilot_dereplicated_Bacteroidales_2

Properties

Avg. coverage: 5.66 Longest contig: 28.04 Kbp Bin length: 3.86 Mbp GC content: 44.99 %
Contigs count: 907 Features count: 3765 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 45 / 55 MC: 1 BSCG 45 / 51 MC: 3 ASCG 13 / 38 MC: 3

Description

highly fragmented

Displaying items 701-750 of 907 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_p_scaffold_22428
Species: Bacteroides intestinalis (50%)
2 1880 bp 48.72 5.72 96.70
scnpilot_expt_750_p_scaffold_10812
Species: Dysgonomonas mossii (50%)
2 3085 bp 45.09 4.54 90.63
scnpilot_expt_750_p_scaffold_46935
Species: Dysgonomonas gadei (50%)
2 1200 bp 43.25 3.54 53.75
scnpilot_expt_750_p_scaffold_16894
Species: Dysgonomonas mossii (50%)
2 2261 bp 49.80 5.09 100.04
scnpilot_expt_750_p_scaffold_33502
Species: Bacteroides sp. HPS0048 (50%)
2 1466 bp 43.18 7.16 90.25
scnpilot_expt_750_p_scaffold_38062
Species: Prevotella sp. BV3P1 (50%)
2 1358 bp 43.45 7.36 99.41
scnpilot_expt_750_p_scaffold_15449
Species: Bacteroides graminisolvens (50%)
2 2399 bp 52.02 5.63 83.91
scnpilot_expt_750_p_scaffold_15962
Species: Prevotella sp. CAG:1185 (50%)
2 2351 bp 42.36 6.91 47.21
scnpilot_expt_750_p_scaffold_48150
Species: Paludibacter propionicigenes (100%)
2 1182 bp 50.76 5.29 93.91
scnpilot_expt_750_p_scaffold_44084
Species: Dysgonomonas mossii (50%)
2 1245 bp 44.98 3.61 91.81
scnpilot_expt_750_p_scaffold_22437
Species: Parabacteroides sp. HGS0025 (50%)
2 1879 bp 43.11 4.92 97.87
scnpilot_expt_750_p_scaffold_50712
Species: Bacteroides pyogenes (50%)
2 1146 bp 41.10 5.45 71.47
scnpilot_expt_750_p_scaffold_22184
Species: Flavobacterium beibuense (50%)
2 1891 bp 44.63 4.76 63.14
scnpilot_expt_750_p_scaffold_14369
Species: Paludibacter propionicigenes (100%)
2 2520 bp 49.56 4.66 95.24
scnpilot_expt_750_p_scaffold_19659
Species: Parabacteroides sp. CAG:409 (50%)
2 2043 bp 49.09 6.61 95.30
scnpilot_expt_750_p_scaffold_23020
Species: Dysgonomonas mossii (50%)
2 1848 bp 42.64 2.44 85.71
scnpilot_expt_750_p_scaffold_19660
Species: Dysgonomonas mossii (100%)
2 2043 bp 44.98 5.51 87.22
scnpilot_expt_750_p_scaffold_18303
Species: RLO_Flavobacteria_35_11 (100%)
2 2138 bp 42.89 2.81 98.92
scnpilot_expt_750_p_scaffold_38591
Species: Dysgonomonas mossii (50%)
2 1348 bp 46.81 7.05 94.58
scnpilot_expt_750_p_scaffold_14889
Species: Dysgonomonas mossii (100%)
2 2461 bp 37.10 5.49 78.02
scnpilot_expt_750_p_scaffold_26001
Species: Bacteroides graminisolvens (50%)
2 1712 bp 38.43 6.13 91.12
scnpilot_expt_750_p_scaffold_11162
Species: RBG_19FT_COMBO_Chloroflexi_62_14_curated (50%)
2 3022 bp 44.37 4.88 59.07
scnpilot_expt_750_p_scaffold_35226
Species: Paludibacter propionicigenes (50%)
2 1423 bp 50.25 6.68 92.13
scnpilot_expt_750_p_scaffold_12956
Species: Bacteroides finegoldii (50%)
2 2714 bp 32.42 6.17 49.30
scnpilot_expt_750_p_scaffold_9877
Species: Dysgonomonas mossii (50%)
2 3304 bp 46.85 5.15 99.61
scnpilot_expt_750_p_scaffold_21765
Species: Dysgonomonas mossii (50%)
2 1915 bp 47.10 4.83 80.05
scnpilot_expt_750_p_scaffold_24502
Species: Dysgonomonas gadei (50%)
2 1779 bp 48.29 5.06 70.99
scnpilot_expt_750_p_scaffold_16664
Species: Flavobacterium psychrophilum (50%)
2 2284 bp 41.77 6.57 97.99
scnpilot_expt_750_p_scaffold_26265
Species: Dysgonomonas gadei (50%)
2 1701 bp 49.09 6.17 95.59
scnpilot_expt_750_p_scaffold_12964
Species: Dysgonomonas mossii (50%)
2 2713 bp 47.55 6.08 98.53
scnpilot_expt_750_p_scaffold_41148
Species: Barnesiella intestinihominis (50%)
2 1297 bp 45.80 3.86 69.39
scnpilot_expt_750_p_scaffold_45919
Species: Dysgonomonas gadei (50%)
2 1216 bp 45.07 6.17 92.27
scnpilot_expt_750_p_scaffold_19933
Species: Paludibacter propionicigenes (50%)
2 2025 bp 43.01 3.46 79.41
scnpilot_expt_750_p_scaffold_20197
Species: Bacteroides sp. CAG:875 (50%)
2 2009 bp 41.81 3.11 38.53
scnpilot_expt_750_p_scaffold_31103
Species: Bacteroides sp. D1 (50%)
2 1533 bp 41.94 4.57 99.22
scnpilot_expt_750_p_scaffold_9375
Species: Bacteroides sp. D22 (50%)
2 3444 bp 39.05 6.24 99.65
scnpilot_expt_750_p_scaffold_36799
Species: Verrucomicrobia bacterium IMCC26134 (50%)
2 1386 bp 67.89 2.53 100.22
scnpilot_expt_750_p_scaffold_41407
Species: Flavihumibacter solisilvae (50%)
2 1292 bp 40.87 4.64 63.16
scnpilot_expt_750_p_scaffold_7755
Species: Alistipes finegoldii CAG:68 (50%)
2 4014 bp 37.39 4.05 90.96
scnpilot_expt_750_p_scaffold_19683
Species: Bacteroides sp. HPS0048 (50%)
2 2041 bp 48.60 6.00 98.92
scnpilot_expt_750_p_scaffold_27059
Species: Parabacteroides sp. HGS0025 (50%)
2 1671 bp 39.74 3.14 88.15
scnpilot_expt_750_p_scaffold_15740
Species: Geofilum rubicundum (50%)
2 2372 bp 47.60 5.27 94.22
scnpilot_expt_750_p_scaffold_10853
Species: GWF2_Bacteroidetes_33_38_curated (50%)
2 3075 bp 47.19 4.39 83.02
scnpilot_expt_750_p_scaffold_41669
Species: Bacteroides coprocola (50%)
2 1288 bp 32.92 2.91 82.69
scnpilot_expt_750_p_scaffold_10599
Species: Bacteroides salyersiae (50%)
2 3128 bp 41.50 5.91 93.32
scnpilot_expt_750_p_scaffold_54147
Species: Bacteroides sp. HPS0048 (50%)
2 1103 bp 48.41 4.53 99.00
scnpilot_expt_750_p_scaffold_18074
Species: Flammeovirgaceae bacterium 311 (50%)
2 2154 bp 44.20 3.48 99.30
scnpilot_expt_750_p_scaffold_12467
Species: Dysgonomonas gadei (100%)
2 2792 bp 47.21 5.37 83.38
scnpilot_expt_750_p_scaffold_39195
Species: Bacteroides graminisolvens (50%)
2 1335 bp 48.31 4.68 95.51
scnpilot_expt_750_p_scaffold_54920
Species: Paludibacter propionicigenes (50%)
2 1094 bp 48.81 5.03 99.54
Displaying items 701-750 of 907 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.