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scnpilot_expt_750_p_scaffold_406_40

Organism: SCNPILOT_EXPT_750_P_Actinomycetales_72_13

near complete RP 52 / 55 BSCG 51 / 51 MC: 1 ASCG 14 / 38
Location: comp(43308..43964)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Microbacterium sp. TS-1 RepID=U2YYL6_9MICO similarity UNIREF
DB: UNIREF100
  • Identity: 72.9
  • Coverage: 218.0
  • Bit_score: 311
  • Evalue 5.60e-82
sigH; RNA polymerase sigma factor RpoE similarity KEGG
DB: KEGG
  • Identity: 73.6
  • Coverage: 208.0
  • Bit_score: 311
  • Evalue 2.10e-82
ECF subfamily RNA polymerase sigma-24 subunit {ECO:0000313|EMBL:GAD35563.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium similarity UNIPROT
DB: UniProtKB
  • Identity: 72.9
  • Coverage: 218.0
  • Bit_score: 311
  • Evalue 7.90e-82

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Taxonomy

Microbacterium sp. TS-1 → Microbacterium → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 657
ATGAGCACGCTTCTCGCCCCGTCGCTTCCGCAGCGCGCGCGCCTAGACTGGCCCGCGATGCCAGAGCACGACGACCGCGACGAACTCAAGCGACAGTTCGAGGAGCAGGCGCTCCCGTACATGGACCAGCTGTACGCGGCCGCGATGCGGATGACGCGGAACCCGGCCGACGCCGCCGACCTCGTGCAGGAGACCTTCGTCAAGGCGTTCCAGGCGTTCTCCTCCTTCGAGCAGGGCACGAACCTCAAGGCCTGGCTGTACCGCATCCAGACGAACACGTACATCAACCAGTACCGCAAGCGCCAGCGCGACCCCTACCAGGGCTCGGTCGACGAGCTCGAGGACTGGCAGCTCGCCGGCGGCGAGTCGGCGACCGCCACCGCCGGCCGCTCCGCCGAGGCCGAGGCGATCGATCACCTGCCGGACTCGGACGTCAAGGACGCGCTCGCCGCGATCCCGGAGGACTTCCGCCTCGCGGTGTACCTCGCCGACGTCGAGGGCTTCTCCTACCAGGAGATCGCGGACATCATGAAGACGCCGGTCGGCACGGTGATGAGCCGGCTGCACCGGGGGCGCAAGCTGCTGCGGGAGAAGCTCAGGGACTACGCCGCCGGGCGCGGCATCGGCGTGACGTCGGCGAAGGAGGCGGCGCGATGA
PROTEIN sequence
Length: 219
MSTLLAPSLPQRARLDWPAMPEHDDRDELKRQFEEQALPYMDQLYAAAMRMTRNPADAADLVQETFVKAFQAFSSFEQGTNLKAWLYRIQTNTYINQYRKRQRDPYQGSVDELEDWQLAGGESATATAGRSAEAEAIDHLPDSDVKDALAAIPEDFRLAVYLADVEGFSYQEIADIMKTPVGTVMSRLHRGRKLLREKLRDYAAGRGIGVTSAKEAAR*