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scnpilot_expt_750_p_scaffold_487_18

Organism: SCNPILOT_EXPT_750_P_Actinomycetales_72_13

near complete RP 52 / 55 BSCG 51 / 51 MC: 1 ASCG 14 / 38
Location: 19117..19800

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-54 n=1 Tax=Salinibacterium sp. PAMC 21357 RepID=UPI000289E223 similarity UNIREF
DB: UNIREF100
  • Identity: 64.5
  • Coverage: 228.0
  • Bit_score: 299
  • Evalue 2.30e-78
Ribosomal subunit interface protein {ECO:0000313|EMBL:EPR77614.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 63.0
  • Coverage: 230.0
  • Bit_score: 296
  • Evalue 3.60e-77
RNA polymerase subunit sigma-54 similarity KEGG
DB: KEGG
  • Identity: 63.6
  • Coverage: 228.0
  • Bit_score: 282
  • Evalue 8.20e-74

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Taxonomy

Leifsonia rubra → Leifsonia → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 684
ATGGACATCTCGCTCACCGCCAAGGGCCTCGACGTCCCGGACCGCTTCCGGGAGTACGCCGCCGAGAAGGCCGAGAAGATCGCCGCGCTCGCCGACCGGGCGATCGCGCTGCAGATCAAGGTGACGAGACACGCCGCGGGCAAGGGCTCCTCGGGCGACGACCGCGTCGAGCTGACCCTCGTCGGGCCCGGCCCGCTGGTGCGGGCGGAGGCGGCGGCCGCCGACAAGTACGCCGCGTTCGACCTGGCGCACGGCCGGCTGCTGGAGCGCGTGCGCGGGGCCAAGGACCGCCGCAAGGTGCACCGCGGTCGCCACCGGCCGGTCTCGCTGCACGACGCGACGGCGGAGGGCTTCCGCGCCGTCGACGTCACGCCGGCGAGCGTCGAGGTGCTGCAGGCCGTCGCCACCGGCTCGGTGCCCGTCCAGCCGGAGGCCGAGCCGGAGTGGTCGCCGGTGGTGATCCGTCGCAAGCTCTTCCCCGCCGCGACCATGACGGCCGACGACGCCGTCGACCACATGGAGCTCGTCGGGCACGACTTCTTCCTGTTCATCGACGCCGAGACCGACCGGCCGAGCGTCGTCTACCGCCGCAAGGGCTGGGCCTACGGGGTCATCGCGCTCGACGCGGAGGCCTCGGAGGCGGACTCGGCGGTCGGCCAGCGTGCGCGGAGGGCGAGCCGGTAG
PROTEIN sequence
Length: 228
MDISLTAKGLDVPDRFREYAAEKAEKIAALADRAIALQIKVTRHAAGKGSSGDDRVELTLVGPGPLVRAEAAAADKYAAFDLAHGRLLERVRGAKDRRKVHRGRHRPVSLHDATAEGFRAVDVTPASVEVLQAVATGSVPVQPEAEPEWSPVVIRRKLFPAATMTADDAVDHMELVGHDFFLFIDAETDRPSVVYRRKGWAYGVIALDAEASEADSAVGQRARRASR*