ggKbase home page

scnpilot_expt_750_bf_scaffold_4226_1

Organism: SCNPILOT_EXPT_750_BF_Sphingomonas_67_7_partial

near complete RP 47 / 55 MC: 1 BSCG 45 / 51 MC: 2 ASCG 9 / 38
Location: 2..694

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-70 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030F69CA similarity UNIREF
DB: UNIREF100
  • Identity: 81.8
  • Coverage: 225.0
  • Bit_score: 369
  • Evalue 2.40e-99
  • rbh
RNA polymerase subunit sigma-70 similarity KEGG
DB: KEGG
  • Identity: 85.3
  • Coverage: 225.0
  • Bit_score: 379
  • Evalue 5.00e-103
RNA polymerase subunit sigma-70 {ECO:0000313|EMBL:AJP72233.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphing similarity UNIPROT
DB: UniProtKB
  • Identity: 85.3
  • Coverage: 225.0
  • Bit_score: 379
  • Evalue 2.50e-102

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Sphingomonas sp. WHSC-8 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 693
AGGGGATACGCAATGTCGAAGATCACGATCGCGCTCGAAGCAGCCGTCGCCACCGTTCTCGAGAACATGCCGAAGGACGCGGCGCAGACGAACCGCCAGCGCGTCCATGTCGATCGTGCCTTCGCCCAGATCCTCAAGCTGATCGCGCCGCGCATCCGCCACTTCGTGCGCCAATACGGACTGAGCGCGCATTGGGAGGATGCCGAGCAGTGCTGCGCCATCGCCGTCCACCGCGCGATCGAATCCTATGATCCCACCAAGGCCCAGTTCACCACGTTCGTGAACTGGCAGATCCGCGGCGAGCTCCAGAGCCTGCGCTTCCGCCTGATGACCGACCAGCGCCCCTCGGCCAGGAAGGTCGAGGCCACCACCGTCTCGCTCAGCGCCCTCGCCGCCACCGATGGCGACGAGATCGCCCCCGAGGCGATGATCGAGGACGAGGAGGCCGTCGCCCGCACCGAAGCCGCCGCTTCCGACTATCTCGCCGAGGGCGCCGTCTCCCAGCTCATCGACGCCTATGTCGACCAGCTCCGCAAGGTCGGCATCGAGGCACTGCGCCGCCGGCCGCGCCCGAAGCGCGCCGAGGCCGCGCTGCGCCGCACCGAGGGGCCGCGCCTGCGCTCGGCCACCCATGGCATCGACCCCGCCGAGCTGGAGAAGCTCGAAGCCAAGCTGAGCCGCGAACCGGCGTGA
PROTEIN sequence
Length: 231
RGYAMSKITIALEAAVATVLENMPKDAAQTNRQRVHVDRAFAQILKLIAPRIRHFVRQYGLSAHWEDAEQCCAIAVHRAIESYDPTKAQFTTFVNWQIRGELQSLRFRLMTDQRPSARKVEATTVSLSALAATDGDEIAPEAMIEDEEAVARTEAAASDYLAEGAVSQLIDAYVDQLRKVGIEALRRRPRPKRAEAALRRTEGPRLRSATHGIDPAELEKLEAKLSREPA*