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scnpilot_p_inoc_scaffold_8255_1

Organism: SCNpilot_P_inoc_Novosphingobium_63_5

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Location: comp(2..805)

Top 3 Functional Annotations

Value Algorithm Source
RND family efflux transporter, MFP subunit n=1 Tax=Rhizobium sp. CF142 RepID=J2L8G0_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 62.2
  • Coverage: 193.0
  • Bit_score: 238
  • Evalue 5.70e-60
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:EJJ29807.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/ similarity UNIPROT
DB: UniProtKB
  • Identity: 62.2
  • Coverage: 193.0
  • Bit_score: 238
  • Evalue 8.00e-60
resistance nodulation cell division (RND) efflux pump, MFP component similarity KEGG
DB: KEGG
  • Identity: 63.5
  • Coverage: 189.0
  • Bit_score: 236
  • Evalue 8.00e-60

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Taxonomy

Rhizobium sp. CF142 → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 804
GTGGTCGCCCTGGCCGAACGGCGAATTGCCGATCCGCTTGCCGTTGGCATCGAAGGCCTGCTTCAGGCGGAGATAGGGTTTCCCATCGCGCGAGACCCAGCCTTCCACCGAAATGGTATCGCCGGGCTTGATGATGTCCCGGCTCCAACCGCGACGCACCAGGATGACCGGCGCATTGGTTTCGGCGCGCCAGTGAACGACCTTCCCGTCCTTCCCCTTTACGTCGAGCGCGACCGTGCCGTGCGGCTGGGCAAGACCGGAACCATGTCGACCTCGCAGGTCGAACAGCTGACCGCGGCGGCCACCGTTGCGGAAGCCCGCACACGATCCGCCGAGCAGTCAATCGCGGTTGCCGAGGCCGATATCAAGGTGGTGGATGCCCAGATCGCCGATATCGATCTCAGGCTTGCCCGCACCAGCGTCAAGGCGCCCGTCGCCGGCGTTATCTCGGCGCGTGATGCCAAGATCGGCGCCATCGCGATGATGGGTGGCGGCCAGCCGCTGTTCACGCTGATCCAGGACGGCGCATTGGAACTGATCGCCGACGTCTCGGAAGGCGAGATCCTCAAGATCAAGGTCGGCCAGAAGGCGACCATCGCGCTTGCCGGCAGCCGCGAAACCCTGAACGGCAGCGTTCGCCTGGTTTCGCCCGCCATCGATGCCGTCTCGCGCCTCGGTTCCGTGCATATCGCCCTCGACGACAGCGAGAAGGCCCGCGCCGGCATGTATGGCAGCGCCACGATCATCGTCGAAACGGCTGATGGCATCGCCCTGCCGCTGACGGCGCTGCTGACCGGCGGCGAC
PROTEIN sequence
Length: 268
VVALAERRIADPLAVGIEGLLQAEIGFPIARDPAFHRNGIAGLDDVPAPTATHQDDRRIGFGAPVNDLPVLPLYVERDRAVRLGKTGTMSTSQVEQLTAAATVAEARTRSAEQSIAVAEADIKVVDAQIADIDLRLARTSVKAPVAGVISARDAKIGAIAMMGGGQPLFTLIQDGALELIADVSEGEILKIKVGQKATIALAGSRETLNGSVRLVSPAIDAVSRLGSVHIALDDSEKARAGMYGSATIIVETADGIALPLTALLTGGD