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SCNpilot_expt_300_bf_scaffold_883_15

Organism: SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9

near complete RP 51 / 55 MC: 1 BSCG 50 / 51 MC: 3 ASCG 11 / 38 MC: 1
Location: comp(9471..9950)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma70 n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B41E89 similarity UNIREF
DB: UNIREF100
  • Identity: 76.7
  • Coverage: 159.0
  • Bit_score: 240
  • Evalue 1.50e-60
Sphingomonas taxi strain 30a NODE_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29496.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadac similarity UNIPROT
DB: UniProtKB
  • Identity: 75.9
  • Coverage: 158.0
  • Bit_score: 245
  • Evalue 3.90e-62
RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
  • Identity: 62.1
  • Coverage: 161.0
  • Bit_score: 196
  • Evalue 4.20e-48

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Taxonomy

Sphingomonas taxi → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 480
TTGGACGAGATCGAACGCGCGCTGGCAAGCATGTTGCCCCGCCTGCGTCGCTTCGCGCATGGCCTCGCCCGCGATCGCGCCGACGCGGACGACCTGACGCAGGCCGCCGCGGAGCGCATCCTGAAATCGCGGGCGCAATGGCGCCCCGGCACCAGCTTCGATGCATGGGCCTATCGCATCCTGCGCAACCTGTGGATCGACACCACGCGCAGCCGCCGGCGTCACGACGCCGTGCTGGCGCCGGAGGAACAGGGGCTGTCGGTCGGCGCTGCGGGAGAGGCGGAGGCGAATGTCGAGCTTGGCTATCTGATGCGCGCGATGGCCCGCCTGCCCGAGGAGCAGCGCGAGGCGGTGGCGCTGGTGATGATCGAGGGGCTGGCCTATGCGGAAGCCGCCGAGGTGCTGGATATCCCGATCGGCACGCTGACCAGCCGCCTCGTGCGCGGCCGTCAGGCGCTGATGGCGATGCTGGAGGATTGA
PROTEIN sequence
Length: 160
LDEIERALASMLPRLRRFAHGLARDRADADDLTQAAAERILKSRAQWRPGTSFDAWAYRILRNLWIDTTRSRRRHDAVLAPEEQGLSVGAAGEAEANVELGYLMRAMARLPEEQREAVALVMIEGLAYAEAAEVLDIPIGTLTSRLVRGRQALMAMLED*