ggKbase home page

SCNpilot_expt_300_bf_scaffold_1554_23

Organism: SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9

near complete RP 51 / 55 MC: 1 BSCG 50 / 51 MC: 3 ASCG 11 / 38 MC: 1
Location: comp(22527..23348)

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, AraC family n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JIA6_HYPSM similarity UNIREF
DB: UNIREF100
  • Identity: 63.0
  • Coverage: 270.0
  • Bit_score: 346
  • Evalue 3.40e-92
  • rbh
AraC family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 63.0
  • Coverage: 270.0
  • Bit_score: 346
  • Evalue 9.50e-93
  • rbh
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CCB65709.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyp similarity UNIPROT
DB: UniProtKB
  • Identity: 63.0
  • Coverage: 270.0
  • Bit_score: 346
  • Evalue 4.70e-92

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Hyphomicrobium sp. MC1 → Hyphomicrobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 822
ATGAAGATACTGACACCCGATGAAACGCGTGCGGCGCTACACGGCTTCGGTCTCGACCAGCCGAGCGGCGTCGGCTTCGCGTTCCTCGATCCGTCCCGCAACACATTCTACGATTGGCACGCGCACGACTATCACCAGCTCGTCTATGCGATCGATGGGCCGAGCCAGATCGAGACGCGCGCCGGCCGCTATGTGCTGCCTGCCGGGCGCGCGGCATGGACTCCCGCCGGCCTGGAGCATCGCACGCTCATCTCGACCTCGCGTGGCGCGGCGCTGTATTTCTCCCCCGAGATGGTGACCGATACGTCCGAGCGAATTCGCATCCTCGTCGCCGAGCCGCTGATGCGCGAGATGATCCTCCATGCGACCCGCTGGCCGCGCGGAGCGAGCGAGGTCGATCCGTTGGCCTCCAGCTTTTTCCGCACGCTGGCGCTGCTGTGCAGGGAATGGCTGGAGGCCGAACTGCCGTTGTTCCTGCCCGGCGCCACGCATCCGGCGATCGCCCGCGCCATGGATTTCGCCGCCGGCGACCTCGCTTCGGCCAGTCAGGCCGGCGCTGCTGCCGCGGCCGGCATGTCGGAGCGATCGTTCCGCAGGGCGTTCACGAGAGAGACCGGAATGAGCTGGCAGGCATGGCTGGGGCAGGCCCGCATCCTCACCGCCATGGGTTTGCTCACGGAAGGGCGCCGGGTGACTGACGTCGCGGCGGAGGTCGGCTATGCATCGCTCAGCGCCTTCGCGCATGCATTCCATAAACTCACAGGCGAGCAGCCGGCTTCGTTTCGTCGTCATCACCTGCCAGCCGCTCGCGCAGTTCAATAG
PROTEIN sequence
Length: 274
MKILTPDETRAALHGFGLDQPSGVGFAFLDPSRNTFYDWHAHDYHQLVYAIDGPSQIETRAGRYVLPAGRAAWTPAGLEHRTLISTSRGAALYFSPEMVTDTSERIRILVAEPLMREMILHATRWPRGASEVDPLASSFFRTLALLCREWLEAELPLFLPGATHPAIARAMDFAAGDLASASQAGAAAAAGMSERSFRRAFTRETGMSWQAWLGQARILTAMGLLTEGRRVTDVAAEVGYASLSAFAHAFHKLTGEQPASFRRHHLPAARAVQ*