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SCNpilot_expt_300_bf_scaffold_1554

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_1554_1
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(388..1974)
DNA (1587bp) protein (529aa)
Putative TonB-dependent receptor n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y462_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:KGB55567.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
TonB-dependent receptor
SCNpilot_expt_300_bf_scaffold_1554_2
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2142..3548
DNA (1407bp) protein (469aa)
amidase; K01426 amidase [EC:3.5.1.4] Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C13685 rbh
amidase
SCNpilot_expt_300_bf_scaffold_1554_3
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3611..3970
DNA (360bp) protein (120aa)
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07H02_RHOP5
sensor/response regulator hybrid
Sensor/response regulator hybrid {ECO:0000313|EMBL:AJA09194.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphin
SCNpilot_expt_300_bf_scaffold_1554_4
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3942..5876
DNA (1935bp) protein (645aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZXL1_9SPHN rbh
sensor/response regulator hybrid
Sensor/response regulator hybrid {ECO:0000313|EMBL:AJA09194.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphin
SCNpilot_expt_300_bf_scaffold_1554_5
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5854..6120
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZXL1_9SPHN
sensor/response regulator hybrid
Sensor/response regulator hybrid {ECO:0000313|EMBL:AJA09194.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphin
SCNpilot_expt_300_bf_scaffold_1554_6
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6117..6677
DNA (561bp) protein (187aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO38858.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas c
hypothetical protein id=12554741 bin=CNBR_ACIDO species=Mycobacterium sp. 155 genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1554_7
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6684..7310
DNA (627bp) protein (209aa)
uracil-DNA glycosylase id=12554740 bin=CNBR_ACIDO species=Sphingobium japonicum genus=Sphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Uncharacterized protein {ECO:0000313|EMBL:CCW17057.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium jap
uracil-DNA glycosylase
SCNpilot_expt_300_bf_scaffold_1554_8
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7403..9466
DNA (2064bp) protein (688aa)
acyl-peptide hydrolase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B756C1 rbh
Acyl-peptide hydrolase {ECO:0000313|EMBL:AHE52774.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sa
peptidase S9 prolyl oligopeptidase
SCNpilot_expt_300_bf_scaffold_1554_9
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9542..10678)
DNA (1137bp) protein (379aa)
Carbohydrate-selective porin OprB n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EA57_9SPHN
carbohydrate-selective porin OprB
Carbohydrate-selective porin OprB {ECO:0000313|EMBL:EHJ61914.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="N
SCNpilot_expt_300_bf_scaffold_1554_10
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10889..12025
DNA (1137bp) protein (379aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0G5Q3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA99030.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium bad
iron transporter
SCNpilot_expt_300_bf_scaffold_1554_11
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12145..12438
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002892473
Uncharacterized protein {ECO:0000313|EMBL:KHA62798.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1554_12
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12466..13080
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030F593A
Uncharacterized protein {ECO:0000313|EMBL:EZP57398.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1554_13
unknown

Not on your lists

comp(13209..13565)
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1554_14
unknown

Not on your lists

comp(13746..14000)
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1554_15
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14371..15270
DNA (900bp) protein (300aa)
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZED1_METPB
PAS/PAC sensor hybrid histidine kinase
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:ACB79616.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source=
SCNpilot_expt_300_bf_scaffold_1554_16
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15463..16023)
DNA (561bp) protein (187aa)
Putative lipoprotein n=1 Tax=Sphingomonas sp. S17 RepID=F3WWT3_9SPHN
membrane protein
Membrane protein {ECO:0000313|EMBL:AIT06620.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_300_bf_scaffold_1554_17
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16150..16512
DNA (363bp) protein (121aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WWT2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAM01246.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas p
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1554_18
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16768..16956)
DNA (189bp) protein (63aa)
Uncharacterized protein {ECO:0000313|EMBL:AHE52414.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
SCNpilot_expt_300_bf_scaffold_1554_19
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17126..17842)
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631030
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_expt_300_bf_scaffold_1554_20
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18456..20534)
DNA (2079bp) protein (693aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I8G9_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB07975.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
TonB-dependent receptor
SCNpilot_expt_300_bf_scaffold_1554_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20628..21176
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI000377293C
Uncharacterized protein {ECO:0000313|EMBL:GAO53731.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1554_22
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21183..22202
DNA (1020bp) protein (340aa)
Cytochrome-c peroxidase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S489_9SPHN rbh
cytochrome-c peroxidase
Cytochrome-c peroxidase {ECO:0000313|EMBL:AGH50860.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
SCNpilot_expt_300_bf_scaffold_1554_23
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22527..23348)
DNA (822bp) protein (274aa)
Transcriptional regulator, AraC family n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JIA6_HYPSM rbh
AraC family transcriptional regulator rbh
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CCB65709.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyp
SCNpilot_expt_300_bf_scaffold_1554_24
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23433..23663
DNA (231bp) protein (77aa)
SAM-dependent methyltransferase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488A97
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:CCB65708.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium s
SCNpilot_expt_300_bf_scaffold_1554_25
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23704..24123
DNA (420bp) protein (140aa)
Methyltransferase type 11 n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JIA5_HYPSM
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:CCB65708.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium s
SCNpilot_expt_300_bf_scaffold_1554_26
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24351..26558
DNA (2208bp) protein (736aa)
Beta-glucosidase {ECO:0000313|EMBL:KGB55771.1}; EC=3.2.1.21 {ECO:0000313|EMBL:KGB55771.1};; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; S
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000365255A rbh
beta-glucosidase
SCNpilot_expt_300_bf_scaffold_1554_27
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26792..26956
DNA (165bp) protein (55aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002D5F09D
Uncharacterized protein {ECO:0000313|EMBL:EQB29732.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium umm
LacI family transcriptional regulator protein
Displaying 27 items

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