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SCNpilot_expt_300_bf_scaffold_6703_1

Organism: SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9

near complete RP 51 / 55 MC: 1 BSCG 50 / 51 MC: 3 ASCG 11 / 38 MC: 1
Location: 3..263

Top 3 Functional Annotations

Value Algorithm Source
Type-IV secretion system protein TraC, partial n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AED6 similarity UNIREF
DB: UNIREF100
  • Identity: 77.3
  • Coverage: 88.0
  • Bit_score: 139
  • Evalue 1.50e-30
Type-IV secretion system protein TraC {ECO:0000313|EMBL:KEZ13742.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sph similarity UNIPROT
DB: UniProtKB
  • Identity: 76.7
  • Coverage: 86.0
  • Bit_score: 139
  • Evalue 2.10e-30
Type-IV secretion system protein TraC similarity KEGG
DB: KEGG
  • Identity: 78.4
  • Coverage: 88.0
  • Bit_score: 137
  • Evalue 1.60e-30

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Taxonomy

Sphingobium yanoikuyae → Sphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 261
CTCCGGTCGCTCAAGCGCAACGGCACCGAATATTCGGACGTGATGATCAAGGGGCCGGAGACGCTCGCCGTCGGCCGCCTTGTCCTCGATCCCTATTCGGCGACGGTCTATTCTTCGTCGCCCAAGACCTTCGCGGCGATCGAGGCGCTCGTCGCCGAGGGCCTCAGCATCGACGAGGCGATCGAGCGCGTCGCCTTTCCCGACAATCCCGAAAAATGGGCGGGCGTCCCCGACGACGCGCTTCCCATCGCAGCGGAGTGA
PROTEIN sequence
Length: 87
LRSLKRNGTEYSDVMIKGPETLAVGRLVLDPYSATVYSSSPKTFAAIEALVAEGLSIDEAIERVAFPDNPEKWAGVPDDALPIAAE*