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SCNpilot_expt_300_bf_scaffold_1387_2

Organism: SCNPILOT_EXPT_300_BF_Devosia_66_6_partial

partial RP 7 / 55 BSCG 5 / 51 ASCG 4 / 38
Location: comp(482..1051)

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase sigma factor n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R924_PELHB similarity UNIREF
DB: UNIREF100
  • Identity: 63.4
  • Coverage: 175.0
  • Bit_score: 230
  • Evalue 1.40e-57
RNA polymerase sigma70 {ECO:0000313|EMBL:KFL28885.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 70.9
  • Coverage: 175.0
  • Bit_score: 253
  • Evalue 1.70e-64
putative RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 63.4
  • Coverage: 175.0
  • Bit_score: 230
  • Evalue 4.00e-58

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Taxonomy

Devosia sp. 17-2-E-8 → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 570
GTGCTACGGTCCTTGACGCCTGAATTCATCAATAGCGGGGTGCTCGACGCCCCGGTGGCCGATGAAACGCTGATCGCTCGCGCGGTCGGCGGCGATCGGCGTGCGTTCGGCGAACTGGTCGAACGGCACTACGATTTCATCTTCCGCACGGCGTGCAAATGGTGCGGCAAGGTGTCGGACGCCGAGGACGTGGCGCAGGACGTGTGCATCAAGCTCGCTTCGGTGCTGAAGAGCTTCGACGGGCGCTCGGCGTTCACCAGCTGGCTCTATCGCGTTACCCTCAATGCGGTGCGCGACATGCAGCGGGCGCGCAGCCGGCGGGGGCGCAACGCCGATCGCTATGCCGAAGTGGCGCCGGACGAATACCTGCCCGAGCAGGAAGACGCAGCGACCTCGCGGGAGCTGTGGAATGCAGTGCGCAAACTTCCCGAACAGCAACGGGATGCGGTGCTGCTGATTTACGCGGAGGGGATGAGCCACGCCGAAGCCGGCGTGATCATGGGGTGCAAGGAGGCGACCGTCTCCTGGCATGTCCACGAAGCCAAAAAGACCCTGAGGGGGCTCCTATGA
PROTEIN sequence
Length: 190
VLRSLTPEFINSGVLDAPVADETLIARAVGGDRRAFGELVERHYDFIFRTACKWCGKVSDAEDVAQDVCIKLASVLKSFDGRSAFTSWLYRVTLNAVRDMQRARSRRGRNADRYAEVAPDEYLPEQEDAATSRELWNAVRKLPEQQRDAVLLIYAEGMSHAEAGVIMGCKEATVSWHVHEAKKTLRGLL*