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SCNpilot_cont_300_bf_scaffold_2554_2

Organism: SCNPILOT_CONT_300_BF_Myxococcales_67_4.9_partial

partial RP 38 / 55 MC: 3 BSCG 37 / 51 MC: 7 ASCG 12 / 38 MC: 1
Location: 1619..1942

Top 3 Functional Annotations

Value Algorithm Source
Fis family sigma-54 specific transcriptional regulator id=12556884 bin=CNBR_ACIDO species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? similarity UNIREF
DB: UNIREF100
  • Identity: 46.0
  • Coverage: 87.0
  • Bit_score: 81
  • Evalue 8.00e-13
Formate hydrogenlyase transcriptional activator {ECO:0000313|EMBL:AKF05649.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandara similarity UNIPROT
DB: UniProtKB
  • Identity: 48.2
  • Coverage: 83.0
  • Bit_score: 77
  • Evalue 9.40e-12
sigma-54 factor interaction domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 45.8
  • Coverage: 96.0
  • Bit_score: 76
  • Evalue 5.50e-12

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Taxonomy

Sandaracinus amylolyticus → Sandaracinus → Myxococcales → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 324
ATGTCCGCGGTCAGCGCGCCTACGCCCCATGCTCCTCGAGCCTCCGTCGATTCGCCGTCGCTCGTGATCGTGAGCTCGTCCCCGAGCTCGTCTCGGGCGGGCACTTCTGCGTCGGCATCGACCGCCCCGGTCGTCGCGTCCGTCGGTGAGCCGCTGCCGACGCTCGACGAGGCGATGCGTACGCACATCGGTCGCGCGCTCGGCCTGACACGCGGACGGATCGAAGGTCGCGGCGGCGCGGCCGACCTGCTCGGCGTCAACCCGCACACGCTGCGGGGCAAGATGCGCCGCCTGAAGATCGACTGGAGCGCGTACCGGACCTGA
PROTEIN sequence
Length: 108
MSAVSAPTPHAPRASVDSPSLVIVSSSPSSSRAGTSASASTAPVVASVGEPLPTLDEAMRTHIGRALGLTRGRIEGRGGAADLLGVNPHTLRGKMRRLKIDWSAYRT*