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SCNpilot_cont_300_bf_scaffold_1461_25

Organism: SCNPILOT_CONT_300_BF_Caulobacter_68_7_partial

partial RP 37 / 55 BSCG 39 / 51 MC: 1 ASCG 10 / 38 MC: 2
Location: comp(22416..24389)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI0003720ABA similarity UNIREF
DB: UNIREF100
  • Identity: 88.0
  • Coverage: 658.0
  • Bit_score: 1108
  • Evalue 0.0
  • rbh
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; C similarity UNIPROT
DB: UniProtKB
  • Identity: 88.0
  • Coverage: 659.0
  • Bit_score: 1107
  • Evalue 0.0
RNA polymerase sigma factor RpoD similarity KEGG
DB: KEGG
  • Identity: 87.8
  • Coverage: 658.0
  • Bit_score: 1106
  • Evalue 0.0
  • rbh

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Taxonomy

Caulobacter vibrioides → Caulobacter → Caulobacterales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1974
ATGAGCAGCACGACCCAGACGGCCGAAACCGAAGCGCCCGAAACCACCGGCGGTGACGGCCCCCTGCTCGACCTCACCGATGCCGGGGTCAAGAAGTTCATCAAGCAGGCCAAGGCCCGCGGCTACGTCACCATGGACGAGCTGAACAAGGTCCTGCCGAGCGAGGAAGTCACCTCCGAGGCCATCGAAGACACCCTGGCCATGCTGTCGGAGATGGGCGTCAACGTCGTCGAGGCGGAAGAAGACGCCCAGGACGCCGAGGGCGGCGAAGTGGTCGCCCGCGAAGAACAGAACGTCATCGAGAGCGAGAAGCCGGCGACCTTCGACCGCACGGACGATCCGGTGCGGATGTACCTGCGCGAGATGGGCAGCGTCGAGCTGCTGTCGCGCGAGGGCGAAATCGCCATCGCCAAGCGGATCGAAGCCGGCCGCGACACCATGATCCGCGGCCTCTGCGAGAGCGCGCTCACCTTCGAAGCCATCATGGTCTGGCGCGAGGAACTCGGCACCGGCCGTATCCTGCTGCGCGAAGTCATCGACCTCGAACAGACCTACAGCGCCATCAACGGCGTCGCCGCGCCGGGTGCGCCGGGCGGCCCGGTCGCTGAAGGCGAGGAAGGCGAAGAGGAAGAAGCCGCAGCCGAGGGTGCGGCCGAGGGCGAAAAGCCGGAAGGCGAGGGCGACGACGACGACTTCGACGATGGCGCCGGTCCGACCGTCAGCGCCATGGAAGGCGAACTGCGCGAAGGCGTCATGGCGACGCTCGACAGCATCGCCGCCGAGTTCGAGGGCTTCCGCAAGCTGCAGGAAAAGCTCGTCGACCGCCGTCTGAAAGGCGAAGACCTCACCGACGCTGAGCGCAAAGCCTACATCGCCGCCACCGGCGAGATCGTCGGCAAGCTGAAGACCCTGAAGCTCAACAACAACCGCATCGAAGCCCTGGTCGACCAGCTCTACGCGATCAACCGTCGCCTCGTGGCGCTGGAAGGGCGCCTGCTGCGCCTGGCCGACAGCTACGGCATCAGCCGCACGGAATTCCTGAAGGCCTACTTCGGCGCCGAGCTGAACCCGAACTGGGCGGATAACGTCAAACAGCTCGGTGTCCGCTGGACCAAGTTCTCCGAGAACGACGGCAGCTCGATCGCCGACATCCGCCAGGAAGTCGCCGCCCTGGCCACCGAGACCGGCGTGCCGATCGACGACTATCGTCGCATTGTCCAGACCGTTCAGAAGGGCGAGCGCGAGGCCCGTCAGGCCAAGAAGGAAATGGTCGAGGCCAACCTGCGCCTCGTGATTTCGATCGCCAAGAAGTACACGAATCGCGGCCTGCAATTCCTTGATCTTATTCAGGAAGGCAACATCGGCCTCATGAAGGCGGTCGATAAGTTCGAGTACCGCCGCGGCTACAAGTTCTCGACCTACGCCACCTGGTGGATTCGTCAGGCGATCACCCGCTCGATCGCTGACCAGGCCCGCACCATCCGTATCCCGGTGCACATGATCGAGACGATCAACAAGATCGTCCGCACCAGCCGCCAGATGCTGCACGAGATCGGCCGCGAGCCGACCCCGGAAGAGCTGGCCGAAAAGCTGGCCATGCCGCTGGAGAAGGTCCGCAAGGTCCTGAAGATCGCCAAGGAACCGATCTCGCTCGAAACCCCGATCGGTGACGAGGAAGACAGCCACCTCGGCGACTTCATCGAGGACAAGAACGCCGTCCTGCCGATCGACGCCGCCATCCAGTCCAACCTGCGCGAGACCACTACCCGCGTGCTGGCGTCGCTGACGCCGCGCGAGGAACGCGTCCTGCGCATGCGCTTCGGCATCGGCATGAACACCGATCACACCCTCGAAGAGGTCGGCCAGCAGTTCAGCGTGACCCGCGAGCGGATCCGTCAGATCGAGGCCAAGGCGCTGCGCAAGTTGAAGCACCCGAGCCGCAGCCGGAAGCTGCGCAGCTTCCTGGACAGCTAG
PROTEIN sequence
Length: 658
MSSTTQTAETEAPETTGGDGPLLDLTDAGVKKFIKQAKARGYVTMDELNKVLPSEEVTSEAIEDTLAMLSEMGVNVVEAEEDAQDAEGGEVVAREEQNVIESEKPATFDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRDTMIRGLCESALTFEAIMVWREELGTGRILLREVIDLEQTYSAINGVAAPGAPGGPVAEGEEGEEEEAAAEGAAEGEKPEGEGDDDDFDDGAGPTVSAMEGELREGVMATLDSIAAEFEGFRKLQEKLVDRRLKGEDLTDAERKAYIAATGEIVGKLKTLKLNNNRIEALVDQLYAINRRLVALEGRLLRLADSYGISRTEFLKAYFGAELNPNWADNVKQLGVRWTKFSENDGSSIADIRQEVAALATETGVPIDDYRRIVQTVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS*