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SCNpilot_cont_300_bf_scaffold_987_27

Organism: SCNPILOT_CONT_300_BF_Alphaproteobacteria_65_35

near complete RP 46 / 55 MC: 1 BSCG 46 / 51 ASCG 11 / 38 MC: 1
Location: 25375..27408

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H8N4_9PROT similarity UNIREF
DB: UNIREF100
  • Identity: 65.9
  • Coverage: 697.0
  • Bit_score: 866
  • Evalue 2.40e-248
  • rbh
RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 88.8
  • Coverage: 608.0
  • Bit_score: 1045
  • Evalue 0.0
RNA polymerase sigma factor RpoD similarity KEGG
DB: KEGG
  • Identity: 67.1
  • Coverage: 683.0
  • Bit_score: 863
  • Evalue 4.40e-248

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Taxonomy

R_Alphaproteobacteria_66_14 → Rhodospirillales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2034
ATGGCGACCAAAACCGCAACTGTAGCCCCGCCTGAAGCCACCGACGCCCGCGAAGACGGCCCTGATGCGCCGCTGCTCGATACGCTCGGCGCCGAACTCAAGAAGCTGGTTCAGAAGGGCAAGGAGCGCGGCTACATCACCTATGACGAGCTGAACGCCGCGCTGCCGCCCGATGAAGTGTCCTCCGAGCAGATCGAGGACACGATGGCGATGCTGTCCGAAGCGGGCGTCAACGTCGTCGAGGCCGAAGAGCAGGAAGAAACCGCCACCAACCCGGCCGAGCCGGCGAAGACCGCCGTGGTCGCCGCCGAGGCGACCGGCGAGGACGAGGAACTCGGCCGCACCGACGATCCCGTCCGCATGTATCTGCGCGAGATGGGCAGCGTCGAGCTCTTGAGCCGCGAAGGCGAAATCGAGATCGCCAAACGCATCGAGGCCGGCCAGGACAAGATGATCGGCGGCATCTGCGAGAGCCCGATGACGATCACCGCGCTGCTGCACTGGCGCGATGCGATCAACGAGGGCCGCATCCTGCTGCGCGACGTCATCGATCTCGAAGCGACCCAGGGTGGCGGCGCTCCCGGCGAGGGCAAGGGCGCCATTCCCGCGGGCCAGCCGATCGTGGCTCCCACCGGTCCGCAGCTTCCGCGTCCGCCGATGCCGAAGCTCGTGCGCCCGCCCGCTCCGGCCGTTGCCGGCCCGGCCGGCGAAGGCGGCGGCGAAGCGACGCCGGGTGAAGGTGGCGAGGAGGACGACGAGAACGCCCTGTCGCTCTCGGCGCTCGAGGAGAAGCTCAAGCCCGAAGTCCTGCGGACCCTCACCAAGGTCTACAAAGTCTACATGGAGATGTCGAAGGTCCAGAACCGGCGCCTGTCGACTCTCAGCCGCGGCCAGAAGCCGAGCCCGGAATTCGAGAGGAGCTACGAAAAGCACCGCAAGAAGATCGTCGAGCTGGTGCGCACGGTTCACATCAACGCCAACCGCATCGAGCAGCTCAAGCTCTCGCTCTACGACTTGAACCGCAAGCTGATGCTGCTCGAGGGCAAGCTGCTGCGCCAGGCCGAGACCTTCCGCATCCCGCGCCAGGACTTCCTCGACAACTACCTCACCCACGAGATCGACCCGAACTGGCTCGAGAAGGTCGGCAAGCTGTCGGGCCGCGGCTGGAAGGACTTCGCCAAGAAGCGCGCCCCCGAGATCGAGAAGATCCGTGCCGAGATCAAGGAGATCTCCGATCACGCCGGCGCGCCGATCTTCGAGTTCCGCCGCATGTGCAAGACCGTGCAGGACGGCGAGCGCGAGATGATGCGGGCGAAGAAGGAGATGATCGAGGCCAACCTGCGCCTCGTGATCTCGATCGCCAAGAAATACACCAACCGTGGCCTGCAGTTCCTCGACCTGATCCAGGAAGGCAACATCGGCCTGATGAAGGCGGTCGACAAGTTCGAGTACCGCCGCGGCTACAAGTTCTCGACCTACGCCACCTGGTGGATTCGCCAGGCCATCACTCGCTCGATCGCCGACCAGGCGCGCACCATCCGTATCCCGGTGCACATGATCGAGACCATCAACAAGCTGGTCCGCACCAGCCGCCAGATGCTGCACGAGATCGGCCGCGAGCCGCAGCCCGAGGAGCTGGCCGAGAAGCTCGGCATGCCGCTCGAGAAGGTGCGCAAGGTGCTGAAGATCGCCAAGGAGCCGATCAGCCTCGAGACGCCGATCGGCGACGAGGAGGATTCCCACCTCGGCGACTTCATCGAGGACAAGAACGCCGTGATCCCGCTCGAGGCGGCGATCCAGGGCAACCTGCGCGAAAGCACGACGCGGGTCCTGGCGACGCTGACGCCGCGCGAGGAGCGCGTGCTGCGCATGCGCTTCGGCATCGGCATGAACACCGACCACACGCTGGAGGAAGTCGGCCAGCAGTTCTCGGTGACCCGCGAGCGTATCCGTCAGATCGAAGCCAAGGCGCTGCGCAAGCTGAAGCATCCCAGCCGTTCGCGCATGCTGCGCTCCTTCCTCGACCAGGGCTGA
PROTEIN sequence
Length: 678
MATKTATVAPPEATDAREDGPDAPLLDTLGAELKKLVQKGKERGYITYDELNAALPPDEVSSEQIEDTMAMLSEAGVNVVEAEEQEETATNPAEPAKTAVVAAEATGEDEELGRTDDPVRMYLREMGSVELLSREGEIEIAKRIEAGQDKMIGGICESPMTITALLHWRDAINEGRILLRDVIDLEATQGGGAPGEGKGAIPAGQPIVAPTGPQLPRPPMPKLVRPPAPAVAGPAGEGGGEATPGEGGEEDDENALSLSALEEKLKPEVLRTLTKVYKVYMEMSKVQNRRLSTLSRGQKPSPEFERSYEKHRKKIVELVRTVHINANRIEQLKLSLYDLNRKLMLLEGKLLRQAETFRIPRQDFLDNYLTHEIDPNWLEKVGKLSGRGWKDFAKKRAPEIEKIRAEIKEISDHAGAPIFEFRRMCKTVQDGEREMMRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPQPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPLEAAIQGNLRESTTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRMLRSFLDQG*