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SCNpilot_cont_300_bf_scaffold_1335_25

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_63_7

near complete RP 45 / 55 MC: 2 BSCG 45 / 51 MC: 3 ASCG 11 / 38 MC: 1
Location: 20292..20495

Top 3 Functional Annotations

Value Algorithm Source
Cold shock protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERK1_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 89.6
  • Coverage: 67.0
  • Bit_score: 129
  • Evalue 1.60e-27
Cold shock protein {ECO:0000313|EMBL:EYR84585.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.5
  • Coverage: 67.0
  • Bit_score: 130
  • Evalue 7.70e-28
putative cold-shock DNA-binding domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 83.3
  • Coverage: 66.0
  • Bit_score: 120
  • Evalue 1.60e-25

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 204
ATGGCAACCGGTACCGTTAAGTTTTTCAATCAGGACAAGGGCTTTGGCTTCATCACCCCCGACAGCGGCGGGCAGGATGTCTTTGTCCACATCTCGGCCGTCCAGTCCGGGGGCCCGCTCAGGGACGGCGACAAGGTCAGCTACGACATCGGCCAGGATCGCAAGACCGGCAAGTCGAAGGCGGAAAACGTCCGCACGATGTAA
PROTEIN sequence
Length: 68
MATGTVKFFNQDKGFGFITPDSGGQDVFVHISAVQSGGPLRDGDKVSYDIGQDRKTGKSKAENVRTM*