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SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial

SCNPILOT_CONT_300_BF_Rhizobiales_67_6
In projects: SCNPILOT_CONT_300_BF

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Description

from TS-ESOM

Displaying items 1-50 of 330 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_300_bf_scaffold_4792
Species: Rhodovulum sp. NI22 (60%)
5 5023 bp 66.10 6.65 90.01
SCNpilot_cont_300_bf_scaffold_13500
Order: Rhizobiales (80%)
5 5050 bp 66.79 6.46 88.40
SCNpilot_cont_300_bf_scaffold_5611
Order: Rhizobiales (75%)
12 5054 bp 63.12 9.04 95.75
SCNpilot_cont_300_bf_scaffold_4741
Genus: Mesorhizobium (80%)
5 5059 bp 66.87 5.85 92.27
SCNpilot_cont_300_bf_scaffold_5705
Order: Rhizobiales (75%)
8 5061 bp 68.05 6.94 80.62
SCNpilot_cont_300_bf_scaffold_11057
Order: Rhizobiales (75%)
4 5119 bp 65.70 6.03 95.00
SCNpilot_cont_300_bf_scaffold_4627
Order: Rhizobiales (57.14%)
7 5143 bp 65.00 6.05 84.99
SCNpilot_cont_300_bf_scaffold_4615
Order: Rhizobiales (80%)
5 5151 bp 65.09 5.12 90.39
SCNpilot_cont_300_bf_scaffold_5608
Order: Rhizobiales (80%)
5 5177 bp 69.17 6.69 86.00
SCNpilot_cont_300_bf_scaffold_24235
Order: Rhizobiales (62.5%)
8 5182 bp 63.43 8.28 84.81
SCNpilot_cont_300_bf_scaffold_16406
Species: Novosphingobium sp. MD-1 (100%)
4 5208 bp 65.38 4.34 85.54
SCNpilot_cont_300_bf_scaffold_12093
Order: Rhizobiales (50%)
6 5241 bp 65.01 7.57 93.53
SCNpilot_cont_300_bf_scaffold_4482
Genus: Burkholderia (50%)
6 5250 bp 67.07 7.65 92.91
SCNpilot_cont_300_bf_scaffold_18671
Species: Novosphingobium sp. MD-1 (100%)
5 5255 bp 66.96 3.73 85.98
SCNpilot_cont_300_bf_scaffold_10708
Order: Rhizobiales (57.14%)
7 5256 bp 66.53 8.40 82.08
SCNpilot_cont_300_bf_scaffold_4425
Order: Rhizobiales (50%)
8 5294 bp 66.53 4.98 92.37
SCNpilot_cont_300_bf_scaffold_6561
Species: Shinella sp. DD12 (50%)
4 5302 bp 68.39 6.34 83.06
SCNpilot_cont_300_bf_scaffold_4944
Order: Rhizobiales (50%)
6 5359 bp 67.48 5.62 86.94
SCNpilot_cont_300_bf_scaffold_9536
Species: Citreicella sp. SE45 (57.14%)
7 5364 bp 69.33 5.71 101.06
SCNpilot_cont_300_bf_scaffold_8378
Order: Rhizobiales (75%)
8 5410 bp 70.59 7.05 96.10
SCNpilot_cont_300_bf_scaffold_11589
Species: Polymorphum gilvum (50%)
6 5425 bp 68.63 6.20 87.71
SCNpilot_cont_300_bf_scaffold_10207
Phylum: Proteobacteria (62.5%)
8 5510 bp 64.83 4.87 77.75
SCNpilot_cont_300_bf_scaffold_6788
Genus: Mesorhizobium (71.43%)
7 5534 bp 63.61 5.26 79.36
SCNpilot_cont_300_bf_scaffold_4108
Order: Rhizobiales (83.33%)
6 5559 bp 68.27 6.28 89.04
SCNpilot_cont_300_bf_scaffold_8196
Order: Rhizobiales (100%)
5 5569 bp 67.48 7.30 90.55
SCNpilot_cont_300_bf_scaffold_4085
Order: Rhizobiales (60%)
5 5578 bp 66.05 5.80 91.59
SCNpilot_cont_300_bf_scaffold_5573
Class: Alphaproteobacteria (80%)
5 5614 bp 66.98 6.30 86.14
SCNpilot_cont_300_bf_scaffold_4032
Order: Rhizobiales (77.78%)
9 5630 bp 67.28 6.02 93.68
SCNpilot_cont_300_bf_scaffold_7119
Phylum: Proteobacteria (85.71%)
7 5652 bp 62.46 6.48 83.49
SCNpilot_cont_300_bf_scaffold_13622
Class: Alphaproteobacteria (100%)
7 5666 bp 67.98 5.40 80.48
SCNpilot_cont_300_bf_scaffold_3985
Genus: Mesorhizobium (100%)
5 5675 bp 65.46 5.88 86.48
SCNpilot_cont_300_bf_scaffold_17107
Genus: Mesorhizobium (71.43%)
7 5681 bp 63.93 6.54 79.32
SCNpilot_cont_300_bf_scaffold_3963
Order: Rhodospirillales (50%)
6 5701 bp 66.73 7.48 92.98
SCNpilot_cont_300_bf_scaffold_5129
Class: Alphaproteobacteria (75%)
8 5708 bp 68.34 6.51 88.19
SCNpilot_cont_300_bf_scaffold_4736
Order: Rhizobiales (60%)
5 5708 bp 69.85 5.72 86.62
SCNpilot_cont_300_bf_scaffold_20549
Order: Rhizobiales (71.43%)
7 5726 bp 66.43 5.57 75.50
SCNpilot_cont_300_bf_scaffold_3899
Order: Rhizobiales (57.14%)
7 5762 bp 67.44 7.49 95.70
SCNpilot_cont_300_bf_scaffold_8593
Class: Alphaproteobacteria (57.14%)
7 5775 bp 66.15 5.13 84.00
SCNpilot_cont_300_bf_scaffold_3883
Phylum: Proteobacteria (71.43%)
7 5776 bp 65.11 6.30 93.96
SCNpilot_cont_300_bf_scaffold_14186
Phylum: Proteobacteria (57.14%)
7 5791 bp 64.84 5.63 84.18
SCNpilot_cont_300_bf_scaffold_5591
Order: Rhizobiales (57.14%)
7 5800 bp 66.62 5.11 94.09
SCNpilot_cont_300_bf_scaffold_4626
Genus: Pseudomonas (60%)
5 5842 bp 68.76 5.37 89.87
SCNpilot_cont_300_bf_scaffold_3785 5 5886 bp 63.27 5.88 98.27
SCNpilot_cont_300_bf_scaffold_20634
Order: Rhizobiales (55.56%)
9 5886 bp 66.79 5.50 83.74
SCNpilot_cont_300_bf_scaffold_5801
Order: Rhizobiales (57.14%)
7 5938 bp 61.45 7.02 81.95
SCNpilot_cont_300_bf_scaffold_3697
Species: Agrobacterium tumefaciens (50%)
6 5984 bp 68.08 5.96 95.40
SCNpilot_cont_300_bf_scaffold_3669
Class: Alphaproteobacteria (50%)
8 6012 bp 66.73 6.22 81.39
SCNpilot_cont_300_bf_scaffold_6744
Order: Rhizobiales (50%)
8 6016 bp 65.44 6.93 81.28
SCNpilot_cont_300_bf_scaffold_10682
Class: Actinobacteria (50%)
6 6043 bp 64.24 6.35 82.36
SCNpilot_cont_300_bf_scaffold_4647
Order: Rhizobiales (71.43%)
7 6131 bp 67.82 5.81 98.01
Displaying items 1-50 of 330 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.