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ACD2_33

Alias: ACD2_937.51741.58

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Displaying items 31-49 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD2_33_31
unknown

Not on your lists


comp(34099..34410)
DNA (312bp) protein (104aa)
50S ribosomal protein L21 n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CK79_9ACTN (db=UNIREF evalue=2.0e-15 bit_score=84.3 identity=45.1 coverage=95.1923076923077)
50S ribosomal protein L21
Ribosomal_L21p (db=HMMPfam db_id=PF00829 from=1 to=97 evalue=9.6e-25 interpro_id=IPR001787 interpro_description=Ribosomal protein L21 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L21p-like (db=superfamily db_id=SSF141091 from=1 to=102 evalue=2.6e-24)
ACD2_33_32
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(35169..36476)
DNA (1308bp) protein (436aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase
seg (db=Seg db_id=seg from=37 to=54)
MUR LIGASE FAMILY MEMBER (db=HMMPanther db_id=PTHR23135 from=41 to=428 evalue=5.8e-96)
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE (db=HMMPanther db_id=PTHR23135:SF4 from=41 to=428 evalue=5.8e-96)
ACD2_33_33
unknown

Not on your lists

36555..37058
DNA (504bp) protein (168aa)
Peptide deformylase n=1 Tax=Alistipes shahii WAL 8301 RepID=D4IJG1_9BACT (db=UNIREF evalue=2.0e-23 bit_score=110.0 identity=38.78 coverage=85.1190476190476)
peptide deformylase (EC:3.5.1.88)
Pep_deformylase (db=HMMPfam db_id=PF01327 from=10 to=159 evalue=5.2e-40 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
Peptide deformylase (db=superfamily db_id=SSF56420 from=1 to=165 evalue=1.4e-36 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
ACD2_33_34
ACD2, Gracilibacteria, Bacteria

Not on your lists

37078..37863
DNA (786bp) protein (262aa)
37078..37863 + (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=ACD2
ACD2_33_35
ACD2, Gracilibacteria, Bacteria

Not on your lists

37871..38434
DNA (564bp) protein (188aa)
LigT-like (db=superfamily db_id=SSF55144 from=17 to=163 evalue=8.9e-07 interpro_id=IPR009097 interpro_description=RNA ligase/cyclic nucleotide phosphodiesterase GO=Molecular Function: catalytic activity (GO:0003824), Cellular Component: intracellular (GO:0005622), Biological Process: RNA metabolic process (GO:0016070))
LigT-like 17..163 Tax=ACD2
ACD2_33_36
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(38431..38577)
DNA (147bp) protein (49aa)
38431..38577 - (rbs_motif=TAA rbs_spacer=8bp)
hypothetical protein Tax=ACD2
ACD2_33_37
ACD2, Gracilibacteria, Bacteria

Not on your lists

38626..39111
DNA (486bp) protein (162aa)
hypothetical protein
seg (db=Seg db_id=seg from=140 to=151)
RuvC (db=HMMPfam db_id=PF02075 from=4 to=149 evalue=2.6e-39 interpro_id=IPR002176 interpro_description=Crossover junction endodeoxyribonuclease RuvC GO=Molecular Function: endodeoxyribonuclease activity (GO:0004520), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
no description (db=Gene3D db_id=G3DSA:3.30.420.10 from=2 to=161 evalue=1.4e-34)
ACD2_33_38
ACD2, Gracilibacteria, Bacteria

Not on your lists

39159..41393
DNA (2235bp) protein (745aa)
39159..41393 + (rbs_motif=TAA rbs_spacer=9bp)
hypothetical protein Tax=ACD2
ACD2_33_39
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(41539..41961)
DNA (423bp) protein (141aa)
seg (db=Seg db_id=seg from=40 to=54)
seg 40..54 Tax=ACD2
ACD2_33_40
ACD2, Gracilibacteria, Bacteria

Not on your lists

42104..43051
DNA (948bp) protein (316aa)
seg (db=Seg db_id=seg from=7 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
Kazal-type serine protease inhibitors (db=superfamily db_id=SSF100895 from=34 to=85 evalue=4.1e-12)
Kazal_2 (db=HMMPfam db_id=PF07648 from=50 to=85 evalue=1.1e-08 interpro_id=IPR011497 interpro_description=Protease inhibitor, Kazal-type)
ACD2_33_41
ACD2, Gracilibacteria, Bacteria

Not on your lists

43041..43478
DNA (438bp) protein (146aa)
seg (db=Seg db_id=seg from=87 to=103)
transmembrane_regions (db=TMHMM db_id=tmhmm from=6 to=28)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=5 to=28 evalue=0.002 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
seg 87..103 Tax=ACD2
ACD2_33_42
ACD2, Gracilibacteria, Bacteria

Not on your lists

43478..43957
DNA (480bp) protein (160aa)
smpB; ssrA RNA (tmRNA)-binding protein
seg (db=Seg db_id=seg from=133 to=144)
smpB: SsrA-binding protein (db=HMMTigr db_id=TIGR00086 from=13 to=156 evalue=1.6e-37 interpro_id=IPR000037 interpro_description=SsrA-binding protein GO=Molecular Function: RNA binding (GO:0003723), Biological Process: translation (GO:0006412))
Small protein B (SmpB) (db=superfamily db_id=SSF74982 from=6 to=138 evalue=2.0e-36 interpro_id=IPR000037 interpro_description=SsrA-binding protein GO=Molecular Function: RNA binding (GO:0003723), Biological Process: translation (GO:0006412))
ACD2_33_43

Not on your lists

44209..45621
DNA (1413bp) protein (471aa)
seg (db=Seg db_id=seg from=428 to=435)
seg (db=Seg db_id=seg from=12 to=45)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=68 to=92)
ACD2_33_44
ACD2, Gracilibacteria, Bacteria

Not on your lists

45661..47226
DNA (1566bp) protein (522aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=14 to=33)
seg (db=Seg db_id=seg from=34 to=45)
seg (db=Seg db_id=seg from=108 to=124)
ACD2_33_45

Not on your lists


comp(47557..47940)
DNA (384bp) protein (128aa)
rplL; putative 50S ribosomal protein L7/L12
seg (db=Seg db_id=seg from=37 to=58)
L12: ribosomal protein L7/L12 (db=HMMTigr db_id=TIGR00855 from=6 to=127 evalue=3.4e-48 interpro_id=IPR000206 interpro_description=Ribosomal protein L7/L12 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN L7/L12 (db=HMMPanther db_id=PTHR11809 from=1 to=127 evalue=8.9e-39)
ACD2_33_46
ACD2, Gracilibacteria, Bacteria

Not on your lists


comp(48161..48865)
DNA (705bp) protein (235aa)
rplJ; 50S ribosomal protein L10
seg (db=Seg db_id=seg from=184 to=234)
Ribosomal_L10 (db=HMMPfam db_id=PF00466 from=5 to=100 evalue=1.8e-14 interpro_id=IPR001790 interpro_description=Ribosomal protein L10 GO=Cellular Component: intracellular (GO:0005622), Biological Process: ribosome biogenesis (GO:0042254))
Ribosomal_L10 (db=HAMAP db_id=MF_00362 from=3 to=165 evalue=19.697)
ACD2_33_47
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(49273..49851)
DNA (579bp) protein (193aa)
coiled-coil (db=Coil db_id=coil from=146 to=167 evalue=NA)
coiled-coil 146..167 Tax=ACD2
ACD2_33_48
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(49853..51424)
DNA (1572bp) protein (524aa)
hypothetical protein
seg (db=Seg db_id=seg from=1 to=20)
ClpP/crotonase (db=superfamily db_id=SSF52096 from=146 to=515 evalue=7.3e-42)
Peptidase_S41 (db=HMMPfam db_id=PF03572 from=335 to=500 evalue=7.7e-27 interpro_id=IPR005151 interpro_description=Peptidase S41 GO=Biological Process: proteolysis (GO:0006508), Molecular Function: serine-type peptidase activity (GO:0008236))
ACD2_33_49

Not on your lists

comp(51447..51737)
DNA (291bp) protein (97aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=68)
Uncharacterized protein {ECO:0000313|EMBL:EKE28915.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
Displaying items 31-49 of 49 in total

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