Alias: ACD2_937.51741.58
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD2_33_31
unknown
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Not on your lists |
comp(34099..34410)
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50S ribosomal protein L21 n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CK79_9ACTN (db=UNIREF evalue=2.0e-15 bit_score=84.3 identity=45.1 coverage=95.1923076923077)
50S ribosomal protein L21
Ribosomal_L21p (db=HMMPfam db_id=PF00829 from=1 to=97 evalue=9.6e-25 interpro_id=IPR001787 interpro_description=Ribosomal protein L21 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L21p-like (db=superfamily db_id=SSF141091 from=1 to=102 evalue=2.6e-24)
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ACD2_33_32
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(35169..36476)
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UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase
seg (db=Seg db_id=seg from=37 to=54)
MUR LIGASE FAMILY MEMBER (db=HMMPanther db_id=PTHR23135 from=41 to=428 evalue=5.8e-96)
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE (db=HMMPanther db_id=PTHR23135:SF4 from=41 to=428 evalue=5.8e-96)
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ACD2_33_33
unknown
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Not on your lists |
36555..37058
|
Peptide deformylase n=1 Tax=Alistipes shahii WAL 8301 RepID=D4IJG1_9BACT (db=UNIREF evalue=2.0e-23 bit_score=110.0 identity=38.78 coverage=85.1190476190476)
peptide deformylase (EC:3.5.1.88)
Pep_deformylase (db=HMMPfam db_id=PF01327 from=10 to=159 evalue=5.2e-40 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
Peptide deformylase (db=superfamily db_id=SSF56420 from=1 to=165 evalue=1.4e-36 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
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ACD2_33_34
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
37078..37863
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37078..37863 + (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=ACD2
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ACD2_33_35
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
37871..38434
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LigT-like (db=superfamily db_id=SSF55144 from=17 to=163 evalue=8.9e-07 interpro_id=IPR009097 interpro_description=RNA ligase/cyclic nucleotide phosphodiesterase GO=Molecular Function: catalytic activity (GO:0003824), Cellular Component: intracellular (GO:0005622), Biological Process: RNA metabolic process (GO:0016070))
LigT-like 17..163 Tax=ACD2
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ACD2_33_36
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(38431..38577)
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38431..38577 - (rbs_motif=TAA rbs_spacer=8bp)
hypothetical protein Tax=ACD2
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ACD2_33_37
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
38626..39111
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hypothetical protein
seg (db=Seg db_id=seg from=140 to=151)
RuvC (db=HMMPfam db_id=PF02075 from=4 to=149 evalue=2.6e-39 interpro_id=IPR002176 interpro_description=Crossover junction endodeoxyribonuclease RuvC GO=Molecular Function: endodeoxyribonuclease activity (GO:0004520), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
no description (db=Gene3D db_id=G3DSA:3.30.420.10 from=2 to=161 evalue=1.4e-34)
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ACD2_33_38
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
39159..41393
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39159..41393 + (rbs_motif=TAA rbs_spacer=9bp)
hypothetical protein Tax=ACD2
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ACD2_33_39
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(41539..41961)
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seg (db=Seg db_id=seg from=40 to=54)
seg 40..54 Tax=ACD2
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ACD2_33_40
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
42104..43051
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seg (db=Seg db_id=seg from=7 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
Kazal-type serine protease inhibitors (db=superfamily db_id=SSF100895 from=34 to=85 evalue=4.1e-12)
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ACD2_33_41
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
43041..43478
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||
ACD2_33_42
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
43478..43957
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smpB; ssrA RNA (tmRNA)-binding protein
seg (db=Seg db_id=seg from=133 to=144)
smpB: SsrA-binding protein (db=HMMTigr db_id=TIGR00086 from=13 to=156 evalue=1.6e-37 interpro_id=IPR000037 interpro_description=SsrA-binding protein GO=Molecular Function: RNA binding (GO:0003723), Biological Process: translation (GO:0006412))
Small protein B (SmpB) (db=superfamily db_id=SSF74982 from=6 to=138 evalue=2.0e-36 interpro_id=IPR000037 interpro_description=SsrA-binding protein GO=Molecular Function: RNA binding (GO:0003723), Biological Process: translation (GO:0006412))
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ACD2_33_43
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
44209..45621
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seg (db=Seg db_id=seg from=428 to=435)
seg (db=Seg db_id=seg from=12 to=45)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=68 to=92)
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ACD2_33_44
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
45661..47226
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=14 to=33)
seg (db=Seg db_id=seg from=34 to=45)
seg (db=Seg db_id=seg from=108 to=124)
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ACD2_33_45
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(47557..47940)
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rplL; putative 50S ribosomal protein L7/L12
seg (db=Seg db_id=seg from=37 to=58)
L12: ribosomal protein L7/L12 (db=HMMTigr db_id=TIGR00855 from=6 to=127 evalue=3.4e-48 interpro_id=IPR000206 interpro_description=Ribosomal protein L7/L12 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN L7/L12 (db=HMMPanther db_id=PTHR11809 from=1 to=127 evalue=8.9e-39)
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ACD2_33_46
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(48161..48865)
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rplJ; 50S ribosomal protein L10
seg (db=Seg db_id=seg from=184 to=234)
Ribosomal_L10 (db=HMMPfam db_id=PF00466 from=5 to=100 evalue=1.8e-14 interpro_id=IPR001790 interpro_description=Ribosomal protein L10 GO=Cellular Component: intracellular (GO:0005622), Biological Process: ribosome biogenesis (GO:0042254))
Ribosomal_L10 (db=HAMAP db_id=MF_00362 from=3 to=165 evalue=19.697)
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ACD2_33_47
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(49273..49851)
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coiled-coil (db=Coil db_id=coil from=146 to=167 evalue=NA)
coiled-coil 146..167 Tax=ACD2
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ACD2_33_48
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(49853..51424)
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hypothetical protein
seg (db=Seg db_id=seg from=1 to=20)
ClpP/crotonase (db=superfamily db_id=SSF52096 from=146 to=515 evalue=7.3e-42)
Peptidase_S41 (db=HMMPfam db_id=PF03572 from=335 to=500 evalue=7.7e-27 interpro_id=IPR005151 interpro_description=Peptidase S41 GO=Biological Process: proteolysis (GO:0006508), Molecular Function: serine-type peptidase activity (GO:0008236))
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ACD2_33_49
uncultured bacterium (gcode 4), Bacteria
|
Not on your lists |
comp(51447..51737)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=68)
Uncharacterized protein {ECO:0000313|EMBL:EKE28915.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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