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SCNpilot_expt_300_bf_scaffold_2114

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_2114_1
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..327)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJ53_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27600.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
N-acetyltransferase GCN5
SCNpilot_expt_300_bf_scaffold_2114_2
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(330..1028)
DNA (699bp) protein (233aa)
Fumarylacetoacetate hydrolase domain-containing protein 1 n=2 Tax=Oligotropha carboxidovorans RepID=B6JBB8_OLICO rbh
fumarylacetoacetate hydrolase family protein
Fumarylacetoacetate hydrolase family protein {ECO:0000313|EMBL:AEI07344.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="
SCNpilot_expt_300_bf_scaffold_2114_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1196..2995)
DNA (1800bp) protein (600aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6N6_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36414.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
ABC transporter
SCNpilot_expt_300_bf_scaffold_2114_4
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3082..4095)
DNA (1014bp) protein (338aa)
UDP-glucose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NMQ5_AFIFE rbh
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EKS27503.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_expt_300_bf_scaffold_2114_5
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4258..4986
DNA (729bp) protein (243aa)
Lipopolysaccharide heptosyltransferase I {ECO:0000313|EMBL:EGP06622.1}; EC=2.4.1.- {ECO:0000313|EMBL:EGP06622.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bra
rfaC; lipopolysaccharide heptosyltransferase 1 (EC:2.-.-.-)
glycosyl transferase family 1 n=1 Tax=Afipia birgiae RepID=UPI000315424E
SCNpilot_expt_300_bf_scaffold_2114_6
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4935..5207
DNA (273bp) protein (91aa)
rfaC; lipopolysaccharide heptosyltransferase I (EC:2.4.-.-)
Lipopolysaccharide heptosyltransferase 1 {ECO:0000313|EMBL:AEI07341.1}; EC=2.-.-.- {ECO:0000313|EMBL:AEI07341.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bra
Lipopolysaccharide heptosyltransferase 1 n=2 Tax=Oligotropha carboxidovorans RepID=B6JBC1_OLICO
SCNpilot_expt_300_bf_scaffold_2114_7
Afipia birgiae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5341..5838)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00037D2C12
SCNpilot_expt_300_bf_scaffold_2114_8
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6841..7212
DNA (372bp) protein (124aa)
histidinol phosphate phosphatase n=1 Tax=Afipia birgiae RepID=UPI0002FE76B7
histone-like nucleoid-structuring protein H-NS
Histone-like nucleoid-structuring protein H-NS {ECO:0000313|EMBL:ABE63810.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source
SCNpilot_expt_300_bf_scaffold_2114_9
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7265..8293)
DNA (1029bp) protein (343aa)
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase n=1 Tax=Afipia birgiae RepID=UPI0002FF4BB6
sugar transferase
Sugar transferase {ECO:0000313|EMBL:ABE63808.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (s
SCNpilot_expt_300_bf_scaffold_2114_10
unknown

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8604..8798
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2114_11
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8906..9184
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00036D98AD
Uncharacterized protein {ECO:0000313|EMBL:CCD95549.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp.
hypothetical protein
SCNpilot_expt_300_bf_scaffold_2114_12
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9170..9505)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003778C42
Putative uncharacterized protein {ECO:0000313|EMBL:EHR01463.1}; Flags: Precursor;; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;
SCNpilot_expt_300_bf_scaffold_2114_13
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9505..11148)
DNA (1644bp) protein (548aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003778C42 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK49063.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Me
SCNpilot_expt_300_bf_scaffold_2114_14
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11684..11956)
DNA (273bp) protein (91aa)
sugar transporter n=1 Tax=Afipia birgiae RepID=UPI00036A0E18
polysaccharide export protein
Polysaccharide export protein {ECO:0000313|EMBL:ABE63803.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter ham
Displaying 14 items

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