ggKbase home page

SCNpilot_expt_300_bf_scaffold_1489_8

Organism: SCNPILOT_EXPT_300_BF_Afipia_64_5_fragment

partial RP 36 / 55 MC: 3 BSCG 39 / 51 MC: 4 ASCG 9 / 38
Location: 5248..5772

Top 3 Functional Annotations

Value Algorithm Source
Ribosome maturation factor RimM n=2 Tax=Oligotropha carboxidovorans RepID=B6JAQ5_OLICO similarity UNIREF
DB: UNIREF100
  • Identity: 77.6
  • Coverage: 174.0
  • Bit_score: 289
  • Evalue 3.10e-75
rimM; 16S rRNA-processing protein RimM similarity KEGG
DB: KEGG
  • Identity: 77.0
  • Coverage: 174.0
  • Bit_score: 287
  • Evalue 2.60e-75
Ribosome maturation factor RimM {ECO:0000313|EMBL:AEI04979.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha c similarity UNIPROT
DB: UniProtKB
  • Identity: 77.0
  • Coverage: 174.0
  • Bit_score: 287
  • Evalue 1.30e-74

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Oligotropha carboxidovorans → Oligotropha → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 525
GTGACTCGAGACACCCACATCTGTGTTGCGAAAATCGGCGCCGCGCATGGCGTGCGCGGCGAGGTGAAGCTGTGGCCGTTCACGCAGGACCCGCTCGCGGTGCTGCATTACGGCCCGCTCTCGACCAAGGACGGCGCGCGGCAGTTCGACGTGCTGCGCGCCCGCGTCGCGAAGGACCATCTGGTCGCGACGCTGAGCGGCATCGCCAACCGCGACGACGCCGCGCGCGTCAACGGCCTCGAGCTCTACATTCCGCGCGAGGCGCTGCCGGCCCCCGAGGCCGACGAATATTATCATGCCGACCTGATCGGCCTGTCCGCGATCGACGCGCAGGGCGCGGCGATCGGCACCATCGTCGCGATCCATAATTTCGGCGCCGGCGACATCGTCGAGATCGCGCCCGCACGCGGCCCAACGCTGCTGCTGCCGTTCACCAACGCGGTGGTGCCGAGCGTCGATCTCGCCAAGGGCCATGCGGTGATCGAATTGCCCGCCGAGGTGGAGGGCGAGGACGATCCATCATGA
PROTEIN sequence
Length: 175
VTRDTHICVAKIGAAHGVRGEVKLWPFTQDPLAVLHYGPLSTKDGARQFDVLRARVAKDHLVATLSGIANRDDAARVNGLELYIPREALPAPEADEYYHADLIGLSAIDAQGAAIGTIVAIHNFGAGDIVEIAPARGPTLLLPFTNAVVPSVDLAKGHAVIELPAEVEGEDDPS*