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SCNpilot_expt_300_bf_scaffold_6846_2

Organism: SCNPILOT_EXPT_300_BF_Afipia_64_5_fragment

partial RP 36 / 55 MC: 3 BSCG 39 / 51 MC: 4 ASCG 9 / 38
Location: comp(563..1087)

Top 3 Functional Annotations

Value Algorithm Source
Hydrophobe/amphiphile efflux-1 (HAE1) family RND transporter n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PE66_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 86.8
  • Coverage: 174.0
  • Bit_score: 297
  • Evalue 8.80e-78
Hydrophobe/amphiphile efflux-1 (HAE1) family RND transporter {ECO:0000313|EMBL:EKS39836.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia. similarity UNIPROT
DB: UniProtKB
  • Identity: 87.4
  • Coverage: 174.0
  • Bit_score: 298
  • Evalue 7.20e-78
mdtC2; multidrug resistance protein MdtC similarity KEGG
DB: KEGG
  • Identity: 86.4
  • Coverage: 176.0
  • Bit_score: 284
  • Evalue 1.70e-74

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Taxonomy

Afipia broomeae → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 525
TTGCTGATCCTGGGTGTGCTGGTCGCGGTCTACATCGTGCTCGGCGTGCTCTATGAAAGCCTCGCCCATCCCTTGACGATTATCTCGACGCTGCCGCCGGCGGGGCTCGGCGCGCTGCTCGCGCTCGCCATCACCGGATTGCCGCTCACGGTGATCGCCTTTGTCGGCGTCATTCTGCTGATCGGAATCGTCAAGAAGAACGGCATCATGATCGTGGACTTCGCACTGGAAGGCGAGCGCCAGCGCGGGCTCTCGTCCGACGAGGCGATCTTCCAGGCCAGCATGGCGCGCTTTCGCCCGATCGTGATGACGACGATGGCCGCATTGCTCGCCGCCGTGCCGCTGGTGATTGCGACCGGCCCCGGCACCGAACTGCGCCGCCCGCTCGGCGTCACCATCATCGGCGGACTGATCGTCTCGCAGGTCCTGACGCTCTATACGACGCCGGTGATCTACCTCCTGATCGACCGGCTGCGGAACAGGATCTCGCCGCGCCCGATGCCGCACGCCGCGCCTGCCGAATAG
PROTEIN sequence
Length: 175
LLILGVLVAVYIVLGVLYESLAHPLTIISTLPPAGLGALLALAITGLPLTVIAFVGVILLIGIVKKNGIMIVDFALEGERQRGLSSDEAIFQASMARFRPIVMTTMAALLAAVPLVIATGPGTELRRPLGVTIIGGLIVSQVLTLYTTPVIYLLIDRLRNRISPRPMPHAAPAE*