ggKbase home page

SCNpilot_solid_1_scaffold_831

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_1_scaffold_831_1
unknown

Not on your lists

888..1013
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_solid_1_scaffold_831_2
Odoribacter splanchnicus CAG:14, Odoribacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2102..2686
DNA (585bp) protein (195aa)
RNA polymerase sigma-24 subunit ECF subfamily n=1 Tax=Odoribacter splanchnicus CAG:14 RepID=R6FDF7_9PORP
RNA polymerase sigma-24 subunit ECF subfamily {ECO:0000313|EMBL:CDB06966.1}; TaxID=1263090 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Odoribacter; environmental
ECF subfamily RNA polymerase sigma-24 subunit
SCNpilot_solid_1_scaffold_831_3
Sulfurovum sp. FS06-10, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2781..3998)
DNA (1218bp) protein (406aa)
Putative uncharacterized protein n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RWZ2_LEAB4
Uncharacterized protein {ECO:0000313|EMBL:KIM09722.1}; TaxID=1539064 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. FS06-10.;"
hypothetical protein
SCNpilot_solid_1_scaffold_831_4
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

4469..5725
DNA (1257bp) protein (419aa)
Putative anti-sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHU1_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKD57008.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
SCNpilot_solid_1_scaffold_831_5
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5946..9275
DNA (3330bp) protein (1110aa)
TonB-dependent receptor plug n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y1R1_PEDHD rbh
TonB-dependent receptor plug {ECO:0000313|EMBL:ACU05053.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter h
TonB-dependent receptor plug rbh
SCNpilot_solid_1_scaffold_831_6
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9285..10670
DNA (1386bp) protein (462aa)
RagB/SusD domain protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y1R2_PEDHD rbh
RagB/SusD domain-containing protein
RagB/SusD domain protein {ECO:0000313|EMBL:ACU05054.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter hepar
SCNpilot_solid_1_scaffold_831_7
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10698..12059
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KNS9_SOLCM
hypothetical protein (DUF3738)/Redoxin
Uncharacterized protein {ECO:0000313|EMBL:AFD05340.1}; Flags: Precursor;; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source=
SCNpilot_solid_1_scaffold_831_8
unknown

Not on your lists

comp(12105..12455)
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_solid_1_scaffold_831_9
unknown

Not on your lists

12738..12995
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_solid_1_scaffold_831_10
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13165..14097)
DNA (933bp) protein (311aa)
Transcriptional regulator, AraC family n=2 Tax=Clostridium botulinum F RepID=A7GC97_CLOBL
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABS40894.1}; TaxID=441772 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinu
SCNpilot_solid_1_scaffold_831_11
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14375..14947
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI000368585F
Uncharacterized protein {ECO:0000313|EMBL:KIC89835.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacte
acetyltransferase
SCNpilot_solid_1_scaffold_831_12
GWF2_Bacteroidetes_43_11_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14951..17155
DNA (2205bp) protein (735aa)
two component LuxR family transcriptional regulator Tax=GWF2_Bacteroidetes_43_11_curated
UPI00028938B9 related cluster id=3464937 bin=GWC1_Spirochaetes_27_15 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC1_Spirochaetes_27_15 organism_group=Spirochaetes
two-component system sensor histidine kinase/response
SCNpilot_solid_1_scaffold_831_13
Flavobacterium frigoris, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

17297..18448
DNA (1152bp) protein (384aa)
Putative uncharacterized protein n=1 Tax=Flavobacterium frigoris PS1 RepID=H7FVK2_9FLAO
Putative uncharacterized protein {ECO:0000313|EMBL:EIA07424.1}; TaxID=1086011 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobact
SCNpilot_solid_1_scaffold_831_14
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19653..22016
DNA (2364bp) protein (788aa)
hypothetical protein n=1 Tax=Nafulsella turpanensis RepID=UPI0003661455 rbh
Uncharacterized protein {ECO:0000313|EMBL:KIC89228.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacte
TonB-dependent receptor plug
SCNpilot_solid_1_scaffold_831_15
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22081..23217
DNA (1137bp) protein (379aa)
PepSY-associated TM helix domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMH0_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC89229.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacte
PepSY-associated TM helix domain-containing protein
SCNpilot_solid_1_scaffold_831_16
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24637..25092)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC85_GEMAT
Uncharacterized protein {ECO:0000313|EMBL:KIC94044.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacte
hypothetical protein
SCNpilot_solid_1_scaffold_831_17
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

25491..25637
DNA (147bp) protein (49aa)
Methyltransferase type 12 n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8ERF5_RUNSL
type 12 methyltransferase
Methyltransferase type 12 {ECO:0000313|EMBL:AEI52196.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29
Displaying 17 items

View Taxonomy