ggKbase home page

MEL_C3_77_2 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
ribosomal large subunit pseudouridine synthase similarity KEGG
DB: KEGG
45.3 232.0 207 6.30e-51 baco:OXB_2309
seg (db=Seg db_id=seg from=132 to=144) iprscan interpro
DB: Seg
null null null null baco:OXB_2309
PSI_RSU (db=PatternScan db_id=PS01149 from=107 to=121 evalue=0.0 interpro_id=IPR018496 interpro_description=Pseudouridine synthase, RsuA and RluB/E/F, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: intramolecular transferase activity (GO:0016866)) iprscan interpro
DB: PatternScan
null null null 0.0 baco:OXB_2309
RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B (db=HMMPanther db_id=PTHR21600:SF2 from=14 to=246 evalue=6.1e-65) iprscan interpro
DB: HMMPanther
null null null 6.10e-65 baco:OXB_2309
RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B (db=HMMPanther db_id=PTHR21600 from=14 to=246 evalue=6.1e-65) iprscan interpro
DB: HMMPanther
null null null 6.10e-65 baco:OXB_2309
TIGR00093: pseudouridine synthase (db=HMMTigr db_id=TIGR00093 from=74 to=233 evalue=1.7e-48 interpro_id=IPR000748 interpro_description=Pseudouridine synthase, RsuA/RluB/E/F GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: intramolecular transferase activity (GO:0016866)) iprscan interpro
DB: HMMTigr
null null null 1.70e-48 baco:OXB_2309
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=66 to=243 evalue=4.5e-39 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982)) iprscan interpro
DB: superfamily
null null null 4.50e-39 baco:OXB_2309
(db=HMMPfam db_id=PF00849 from=70 to=201 evalue=1.8e-22 interpro_id=IPR006145 interpro_description=Pseudouridine synthase, RsuA and RluB/C/D/E/F GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982)) iprscan interpro
DB: HMMPfam
null null null 1.80e-22 baco:OXB_2309
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=10 to=76 evalue=8.4e-14) iprscan interpro
DB: superfamily
null null null 8.40e-14 baco:OXB_2309
(db=HMMPfam db_id=PF01479 from=11 to=56 evalue=1.2e-09 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: HMMPfam
null null null 1.20e-09 baco:OXB_2309
no description (db=HMMSmart db_id=SM00363 from=10 to=68 evalue=2.3e-09 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: HMMSmart
null null null 2.30e-09 baco:OXB_2309
S4 (db=ProfileScan db_id=PS50889 from=10 to=73 evalue=13.467 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: ProfileScan
null null null 1.35e+01 baco:OXB_2309
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridiu UNIPROT
DB: UniProtKB
60.9 243.0 306 3.80e-80 R6QES6_9CLOT
ribosomal large subunit pseudouridine synthase B; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] alias=MEL_C1_C00001G00662 id=161950 tax=MEL_C1 species=Synechococcus sp. WH 5701 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria similarity UNIREF
DB: UNIREF90
61.2 null 292 1.60e-76 baco:OXB_2309