Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
ribosomal large subunit pseudouridine synthase | similarity |
KEGG
DB: KEGG |
45.3 | 232.0 | 207 | 6.30e-51 | baco:OXB_2309 |
seg (db=Seg db_id=seg from=132 to=144) | iprscan |
interpro
DB: Seg |
null | null | null | null | baco:OXB_2309 |
PSI_RSU (db=PatternScan db_id=PS01149 from=107 to=121 evalue=0.0 interpro_id=IPR018496 interpro_description=Pseudouridine synthase, RsuA and RluB/E/F, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: intramolecular transferase activity (GO:0016866)) | iprscan |
interpro
DB: PatternScan |
null | null | null | 0.0 | baco:OXB_2309 |
RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B (db=HMMPanther db_id=PTHR21600:SF2 from=14 to=246 evalue=6.1e-65) | iprscan |
interpro
DB: HMMPanther |
null | null | null | 6.10e-65 | baco:OXB_2309 |
RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B (db=HMMPanther db_id=PTHR21600 from=14 to=246 evalue=6.1e-65) | iprscan |
interpro
DB: HMMPanther |
null | null | null | 6.10e-65 | baco:OXB_2309 |
TIGR00093: pseudouridine synthase (db=HMMTigr db_id=TIGR00093 from=74 to=233 evalue=1.7e-48 interpro_id=IPR000748 interpro_description=Pseudouridine synthase, RsuA/RluB/E/F GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: intramolecular transferase activity (GO:0016866)) | iprscan |
interpro
DB: HMMTigr |
null | null | null | 1.70e-48 | baco:OXB_2309 |
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=66 to=243 evalue=4.5e-39 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982)) | iprscan |
interpro
DB: superfamily |
null | null | null | 4.50e-39 | baco:OXB_2309 |
(db=HMMPfam db_id=PF00849 from=70 to=201 evalue=1.8e-22 interpro_id=IPR006145 interpro_description=Pseudouridine synthase, RsuA and RluB/C/D/E/F GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 1.80e-22 | baco:OXB_2309 |
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=10 to=76 evalue=8.4e-14) | iprscan |
interpro
DB: superfamily |
null | null | null | 8.40e-14 | baco:OXB_2309 |
(db=HMMPfam db_id=PF01479 from=11 to=56 evalue=1.2e-09 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 1.20e-09 | baco:OXB_2309 |
no description (db=HMMSmart db_id=SM00363 from=10 to=68 evalue=2.3e-09 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) | iprscan |
interpro
DB: HMMSmart |
null | null | null | 2.30e-09 | baco:OXB_2309 |
S4 (db=ProfileScan db_id=PS50889 from=10 to=73 evalue=13.467 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) | iprscan |
interpro
DB: ProfileScan |
null | null | null | 1.35e+01 | baco:OXB_2309 |
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridiu |
UNIPROT
DB: UniProtKB |
60.9 | 243.0 | 306 | 3.80e-80 | R6QES6_9CLOT | |
ribosomal large subunit pseudouridine synthase B; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] alias=MEL_C1_C00001G00662 id=161950 tax=MEL_C1 species=Synechococcus sp. WH 5701 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria | similarity |
UNIREF
DB: UNIREF90 |
61.2 | null | 292 | 1.60e-76 | baco:OXB_2309 |