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MEL_C3_40_14 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=108 to=178 evalue=3.1e-12 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct iprscan interpro
DB: superfamily
null null null 3.10e-12 apv:Apar_0455
(db=HMMPfam db_id=PF04545 from=125 to=172 evalue=7.5e-12 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 7.50e-12 apv:Apar_0455
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=30 to=106 evalue=2.3e-07 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Functi iprscan interpro
DB: superfamily
null null null 2.30e-07 apv:Apar_0455
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=3 to=176 evalue=3.6e-05 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:001698 iprscan interpro
DB: HMMTigr
null null null 3.60e-05 apv:Apar_0455
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clost UNIPROT
DB: UniProtKB
43.0 186.0 157 1.60e-35 R6QEF4_9CLOT
sigJ; RNA polymerase sigma factor SigF; K03090 RNA polymerase sigma-B factor alias=ACD20_7213.24407.14G0007,ACD20_7213.24407.14_7,ACD20_C00128G00007 id=20313 tax=ACD20 species=unknown genus=unknown taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm similarity UNIREF
DB: UNIREF90
43.9 null 156 1.10e-35 apv:Apar_0455
sigma-B/F/G subfamily RNA polymerase sigma-28 factor KEGG
DB: KEGG
32.4 185.0 90 6.40e-16 apv:Apar_0455