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SCNpilot_expt_500_bf_scaffold_16611

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_16611_1
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..486)
DNA (486bp) protein (162aa)
Di-/tricarboxylate transporter n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0CFZ9_RHILT
Transporter, putative {ECO:0000313|EMBL:CDP49943.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
putative transmembrane transport protein
SCNpilot_expt_500_bf_scaffold_16611_2
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(483..1166)
DNA (684bp) protein (228aa)
UPI0003D022A4 related cluster n=1 Tax=unknown RepID=UPI0003D022A4
Permease {ECO:0000313|EMBL:EXL10326.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_16611_3
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1309..2184
DNA (876bp) protein (292aa)
Periplasmic component of the Tol biopolymer transport system n=1 Tax=Rhizobium sp. CF142 RepID=J2B603_9RHIZ rbh
Biopolymer transporter Tol {ECO:0000313|EMBL:KKB85025.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
periplasmic component of the Tol biopolymer transport system rbh
SCNpilot_expt_500_bf_scaffold_16611_4
unknown

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2184..2306
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_16611_5
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2413..2829)
DNA (417bp) protein (139aa)
AsnC family transcriptional regulator n=1 Tax=Nitratireductor indicus C115 RepID=K2P7R5_9RHIZ
AsnC family transcriptional regulator {ECO:0000313|EMBL:EKF43281.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
putative transcriptional regulator, AsnC/Lrp family
SCNpilot_expt_500_bf_scaffold_16611_6
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2973..3989
DNA (1017bp) protein (339aa)
1-aminocyclopropane-1-carboxylate deaminase {ECO:0000256|HAMAP-Rule:MF_00807}; Short=ACC deaminase {ECO:0000256|HAMAP-Rule:MF_00807};; Short=ACCD {ECO:0000256|HAMAP-Rule:MF_00807};; EC=3.5.99.7 {ECO:0000256|HAMAP-Rule:MF_00807};; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
1-aminocyclopropane-1-carboxylate deaminase; K01505 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7] rbh
1-aminocyclopropane-1-carboxylate deaminase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037D6A6C rbh
SCNpilot_expt_500_bf_scaffold_16611_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3990..4805)
DNA (816bp) protein (272aa)
Methyl-accepting chemotaxis protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZP9_9RHIZ
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EYR78217.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mcpV2; methyl-accepting chemotaxis protein
Displaying 7 items

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