ggKbase home page

SCNpilot_expt_500_bf_scaffold_22_26

Organism: SCNPILOT_EXPT_300_BF_Stenotrophomonas_69_97

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: comp(22589..24511)

Top 3 Functional Annotations

Value Algorithm Source
ATP-dependent RNA helicase DeaD {ECO:0000256|HAMAP-Rule:MF_00964}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00964};; Cold-shock DEAD box protein A {ECO:0000256|HAMAP-Rule:MF_00964}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.6
  • Coverage: 667.0
  • Bit_score: 1017
  • Evalue 1.10e-293
DEAD/DEAH box helicase; K05592 ATP-dependent RNA helicase DeaD [EC:3.6.4.13] similarity KEGG
DB: KEGG
  • Identity: 78.3
  • Coverage: 665.0
  • Bit_score: 993
  • Evalue 2.30e-287
  • rbh
RNA helicase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000300A86F similarity UNIREF
DB: UNIREF100
  • Identity: 80.1
  • Coverage: 658.0
  • Bit_score: 1010
  • Evalue 5.70e-292
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Stenotrophomonas rhizophila → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1923
ATGTCCCAAGAATCCCCCGCGCCGCTGCTGTTCGCAGACCTCGGCCTGTCCGACGCTGTGATGAAGGCCGTGGCCGCCGTCGGCTACGAGACGCCGTCGCCGATCCAGGCCGCCACCATCCCGGCGATGCTGCAAGGCCGCGACGTCCTCGGCCAGGCGCAGACCGGCACCGGCAAGACCGGCGCCTTCGCGTTGCCGGTGCTGTCCAACATCGACATTTCCGCCACCAGACCGCAGGTGCTGGTGCTGGCCCCGACCCGCGAACTGGCCATCCAGGTCGCCGAGGCCTTCCAGAGCTATTCGGCGTCGATGCCCGGCTTCCGCGTGCTGCCGGTGTACGGCGGCCAGCCCTACGGCCAGCAGCTGTCGGCGCTGCGTCGCGGCGTGCACGTGGTGGTCGGCACCCCCGGCCGCGTCATCGACCACCTGGACCGCGGCACGCTGGACCTGTCCGAGCTGAAGACGCTGGTGCTGGACGAGGCCGACGAAATGCTGCGCATGGGCTTCATCGACGACGTCGAAGCCGTGCTCAAGAAGCTGCCGGAAACCCGCCAGGTCGCGCTGTTCTCGGCGACCATGCCGTCGCAGATCCGCCGCATCGCGCAGACCTACCTGCGCGACCCGGTGGAAGTGACCATCGCCTCCAAGACCACCACCTCGGCCAACATCCGCCAGCGCTACTGGTGGGTGAGCGGCATGCACAAGCTCGATGCGCTGACCCGGATCCTGGAAGTGGAACCGTTCGACGCGATGATCGTCTTCGCGCGTACCAAGGCCGGCACCGAGGAACTGGCCGAGAAGCTGCAGGCGCGCGGCCTGGCCGCCGCGGCCATCAACGGCGACATGCAGCAGGCCCAGCGCGAGCGCACCATCGGCCAGCTGAAGGAAGGCAAGCTGGACATCCTCGTCGCCACCGACGTGGCCGCGCGCGGCCTGGACGTGGAGCGCATCAGCCACGTGCTGAACTACGACATCCCGTACGACACCGAAAGCTACGTGCACCGCATCGGCCGCACCGGTCGCGCCGGGCGCAGCGGCGAGGCGATCCTGTTCGTCACCCCGCGCGAGAAGGGCATGCTGCGCCAGATCGAGCGCGCCACCCGCCAGCCGATCGAGGAAATGCAGCTGCCGACGGTGGATGCGGTCAACGACCACCGCGTGGCCAAGTTCATGGAGCGCATCAGCCAGACCCTGGCCGATGGCGACACCGATTTCTACCGCGACCTGGTGCAGCGCTACGAGAACGAGCACAACGTGCCGGCGGTGGAGATCGCCGCCGCGCTGGCGCGCCTGCTGCAGGGCGATGCCCCGTTCCTGCTGGCCCCGCCGGTGCGCGAGCGCCGCGAGCCGCCGGCCGGGCGCAACGAGCGTCCGGCGCGCGATGGCGGTTTCCCGCGCCACCGCGAGGACCGTGGCGAGCGCCCGGCGCGGTTCGAGCCGCGCTTCGAGCGTGCCCCGCAGGCGGATGACGGCGAGCGCCCGGCGCGCGCCGAAGGCGCCTTCGAGCCGCGCCAGCGCCGTGAGATGCCGCCGCGCGGCGCGCCGGAATTCGGCATGGAGACCTACCGCATCGAGGTCGGCCACATGCACGGCGTGAAGCCTGCCAACATCGTCGGCGCCATCGCCAACGAGGCCGGGCTGGAGAGCCGCTACATCGGCCGCATCGACATCCACGACGATCACTCGGTGCTCGACCTGCCGGCGGAAATGCCGGCCGATACCCTGCAGCACCTGCAGAAGGTATGGGTGTCGGGCCAGCAACTGCGCATGCGCAGGGTGGAACCGGGCGAAGCGCAGGATGCCGCACCGGCGTCCAAGCCGCGCTTCGGCAAGGGCCCCCGGCCTGCCGGGCGTCCCGGCGGTCCGCGGGCTCCGGGCGGGCGCCCGGGGGGCTTCAAGCCACGCGGTCCGCGCGGTGCCTGA
PROTEIN sequence
Length: 641
MSQESPAPLLFADLGLSDAVMKAVAAVGYETPSPIQAATIPAMLQGRDVLGQAQTGTGKTGAFALPVLSNIDISATRPQVLVLAPTRELAIQVAEAFQSYSASMPGFRVLPVYGGQPYGQQLSALRRGVHVVVGTPGRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPETRQVALFSATMPSQIRRIAQTYLRDPVEVTIASKTTTSANIRQRYWWVSGMHKLDALTRILEVEPFDAMIVFARTKAGTEELAEKLQARGLAAAAINGDMQQAQRERTIGQLKEGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIERATRQPIEEMQLPTVDAVNDHRVAKFMERISQTLADGDTDFYRDLVQRYENEHNVPAVEIAAALARLLQGDAPFLLAPPVRERREPPAGRNERPARDGGFPRHREDRGERPARFEPRFERAPQADDGERPARAEGAFEPRQRREMPPRGAPEFGMETYRIEVGHMHGVKPANIVGAIANEAGLESRYIGRIDIHDDHSVLDLPAEMPADTLQHLQKVWVSGQQLRMRRVEPGEAQDAAPASKPRFGKGPRPAGRPGGPRAPGGRPGGFKPRGPRGA*