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SCNpilot_expt_500_bf_scaffold_554_23

Organism: SCNPILOT_EXPT_1000_BF_Burkholderiales_68_66

near complete RP 52 / 55 MC: 2 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(19171..19779)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=18 Tax=Bordetella pertussis RepID=F4LDX9_BORPC similarity UNIREF
DB: UNIREF100
  • Identity: 95.0
  • Coverage: 202.0
  • Bit_score: 381
  • Evalue 7.00e-103
rpoD; RNA polymerase sigma factor 70 similarity KEGG
DB: KEGG
  • Identity: 95.0
  • Coverage: 202.0
  • Bit_score: 381
  • Evalue 2.20e-103
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=743278 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis B1920.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.0
  • Coverage: 202.0
  • Bit_score: 381
  • Evalue 9.80e-103

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Taxonomy

Bordetella pertussis → Bordetella → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 609
ATGAAGGCCGTCGACAAGTTCGAGTACCGGCGCGGCTACAAGTTCTCCACCTATGCCACGTGGTGGATCCGCCAGGCCATCACGCGCTCGATCGCCGACCAGGCGCGCACCATCCGCATCCCGGTGCACATGATCGAGACGATCAACAAGATGAACCGCATCAGCCGCCAGATCCTGCAGGAGACCGGCCAGGAGCCCGATCCGCAGACGCTGGCCGCGCGCATGGAGATGCCCGAGGACAAGATCCGCAAGATCCTCAAGATCGCCAAGGAGCCCATCTCCATGGAGACGCCGATCGGCGACGACGACGACTCGCACCTGGGCGACTTCATCGAGGATACGGCCACGCTCGCGCCGGCCGACGCCGCGCTGCACGCCTCGATGCACAACGTGGTCAAGGAGGTGCTGGACTCGCTCACGCCGCGCGAGGCCAAGGTGCTGCGCATGCGCTTCGGCATCGAGATGAGTACCGACCACACGCTCGAGGAAGTCGGCAAGCAGTTCGACGTCACGCGCGAGCGCATCCGCCAGATCGAGGCCAAGGCACTGCGCAAGCTGCGCCACCCGAGCCGCGCGGACAAGCTCAAGAGCTTCCTCGAAGGCCAATAG
PROTEIN sequence
Length: 203
MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGQEPDPQTLAARMEMPEDKIRKILKIAKEPISMETPIGDDDDSHLGDFIEDTATLAPADAALHASMHNVVKEVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLEGQ*