ggKbase home page

SCNpilot_expt_500_bf_scaffold_1380_28

Organism: SCNPILOT_EXPT_300_BF_Thiobacillus_SCN2_64_69

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 MC: 3 ASCG 12 / 38
Location: 23343..23780

Top 3 Functional Annotations

Value Algorithm Source
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 id=12498489 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 146.0
  • Bit_score: 302
  • Evalue 3.00e-79
  • rbh
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 similarity KEGG
DB: KEGG
  • Identity: 88.3
  • Coverage: 145.0
  • Bit_score: 268
  • Evalue 1.50e-69
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 91.0
  • Coverage: 145.0
  • Bit_score: 278
  • Evalue 6.50e-72

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RIFOXYD1_FULL_Hydrogenophilales_62_11_curated → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 438
ATGAAAACCTATTCCGCCAAACCCGCTGAAGTGAAACGCGACTGGTACGTCGTCGATGCCGATGACAAGGTGCTGGGCCGTCTGGCTTCCGAGATTGCCCGCCGTCTGCGCGGCAAGCACAAGCCCGAATACACTCCGCACGTCGATACCGGCGATTACATCGTCGTGGTCAATGCCGACAAAATGCGTGTCACGGGCAACAAGGAACTCGACAAGAAGTACTACCGCCATTCCGGCTACCCGGGCGGCATCTACGAAACCACCTTTGGCAAGATGCAGGCGCGTTTTCCCGGCCGTGCACTGGAAAAGGCGGTCAAGGGCATGCTGCCCAAGGGCCCGTTGGGCTACGCCATGATCAAGAAGATGAAGATCTACGCGGGCGCGGAACACCCGCACACGGCGCAGCAACCCCAGCCCCTGGAAATCAACGCTCAATAA
PROTEIN sequence
Length: 146
MKTYSAKPAEVKRDWYVVDADDKVLGRLASEIARRLRGKHKPEYTPHVDTGDYIVVVNADKMRVTGNKELDKKYYRHSGYPGGIYETTFGKMQARFPGRALEKAVKGMLPKGPLGYAMIKKMKIYAGAEHPHTAQQPQPLEINAQ*