ggKbase home page

SCNpilot_expt_500_bf_scaffold_5832_8

Organism: SCNPILOT_EXPT_300_BF_Rhodanobacter_67_27

near complete RP 46 / 55 BSCG 46 / 51 MC: 3 ASCG 11 / 38 MC: 2
Location: 5678..6193

Top 3 Functional Annotations

Value Algorithm Source
Ribosome maturation factor RimM n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQC0_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 90.6
  • Coverage: 171.0
  • Bit_score: 321
  • Evalue 4.30e-85
  • rbh
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.6
  • Coverage: 171.0
  • Bit_score: 321
  • Evalue 6.00e-85
16S rRNA processing protein RimM similarity KEGG
DB: KEGG
  • Identity: 87.0
  • Coverage: 177.0
  • Bit_score: 308
  • Evalue 1.20e-81
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhodanobacter thiooxydans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 516
ATGACGACAGCCGGTCGGCGCGTCCTGATCGGGCGCATCGTCGGGCTGTATGGCGTGCAGGGCTGGCTGAAGATCGAATCCTTCGCCGAGCCGCGCATGCGGATCTTCGATTACCAGCCGTGGCTGCTCGGTGCAGCGCCAGGCACGGAAAGAGAGGTCTCCGGCGTGAAAGGTCGACCGCAGGGCAAGGGCATGGTGGCCCAGTTGCCCGGGGTGGACGATCGGGACCAGGCGGCAGCGTTGATCGGTACCGACATCCATGTCGCCCGCGAACAGCTGCCTCCTCCGGCGAAGGGCGAGTATTACTGGGTCGACCTCGAAGGACTCGATGTCGTCACCGCGGACAACGTGGAGCTGGGGCGGGTCAGCCACCTGTTCGCCACCGGCGCCAACGATGTCGTGGTGGTCAGGGACGGTACGCGCGAGCGGCTGATCCCCTTTGTCCAGGGGTCGTATGTGCGTTCGGTGGACTTGTCCGCAGGGCGCATGGTGGTGGACTGGGATCCCGAATTCTGA
PROTEIN sequence
Length: 172
MTTAGRRVLIGRIVGLYGVQGWLKIESFAEPRMRIFDYQPWLLGAAPGTEREVSGVKGRPQGKGMVAQLPGVDDRDQAAALIGTDIHVAREQLPPPAKGEYYWVDLEGLDVVTADNVELGRVSHLFATGANDVVVVRDGTRERLIPFVQGSYVRSVDLSAGRMVVDWDPEF*