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SCNpilot_expt_500_bf_scaffold_5832

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_5832_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..336
DNA (336bp) protein (112aa)
primary replicative DNA helicase (EC:3.6.1.-)
Replicative DNA helicase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5S3_9GAMM
Replicative DNA helicase {ECO:0000313|EMBL:EIL94814.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_500_bf_scaffold_5832_2
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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495..1583
DNA (1089bp) protein (363aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
alanine racemase (EC:5.1.1.1); K01775 alanine racemase [EC:5.1.1.1]
Alanine racemase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W518_9GAMM
SCNpilot_expt_500_bf_scaffold_5832_3
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

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comp(2054..2383)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:786 RepID=R5H4Q6_9FIRM
Tax=RBG_16_Chloroflexi_63_12_curated
SCNpilot_expt_500_bf_scaffold_5832_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2685..2993
DNA (309bp) protein (103aa)
DNA repair protein radA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQB6_9GAMM
DNA repair protein RadA
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_5832_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3012..4496)
DNA (1485bp) protein (495aa)
ABC transporter permease (Fragment) n=1 Tax=Rhodanobacter sp. 115 RepID=I4W516_9GAMM rbh
ABC transporter permease {ECO:0000313|EMBL:EIL94557.1}; Flags: Fragment;; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ABC-type uncharacterized transport system, permease component rbh
SCNpilot_expt_500_bf_scaffold_5832_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4812..5222
DNA (411bp) protein (137aa)
Signal recognition particle protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQB8_9GAMM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
signal recognition particle protein
SCNpilot_expt_500_bf_scaffold_5832_7
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5418..5675
DNA (258bp) protein (86aa)
30S ribosomal protein S16 n=1 Tax=Dyella japonica RepID=UPI0002ECBD8C
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SSU ribosomal protein S16P
SCNpilot_expt_500_bf_scaffold_5832_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5678..6193
DNA (516bp) protein (172aa)
Ribosome maturation factor RimM n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQC0_9GAMM rbh
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
16S rRNA processing protein RimM rbh
SCNpilot_expt_500_bf_scaffold_5832_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6227..7015
DNA (789bp) protein (263aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQC1_9GAMM rbh
tRNA (guanine-N1)-methyltransferase rbh
SCNpilot_expt_500_bf_scaffold_5832_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7122..7400
DNA (279bp) protein (93aa)
50S ribosomal protein L19 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5T1_9GAMM
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ribosomal protein L19
SCNpilot_expt_500_bf_scaffold_5832_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7333..8859)
DNA (1527bp) protein (509aa)
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5T2_9GAMM
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:EIL94823.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
SCNpilot_expt_500_bf_scaffold_5832_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9648..10658)
DNA (1011bp) protein (337aa)
L-lysine 2,3-aminomutase (EC:5.4.3.2)
Lysine-2,3-aminomutase-related protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYI1_9GAMM rbh
Lysine-2,3-aminomutase-related protein {ECO:0000313|EMBL:EIL92272.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_expt_500_bf_scaffold_5832_13
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10732..11280
DNA (549bp) protein (183aa)
Elongation factor P n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5T4_9GAMM rbh
translation elongation factor P
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_5832_14
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11499..12830
DNA (1332bp) protein (444aa)
N-ethylammeline chlorohydrolase n=1 Tax=Dyella ginsengisoli RepID=UPI00034D937B
cytosine deaminase-like metal-dependent hydrolase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_5832_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12845..13099
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQC7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM01669.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5832_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13192..13896
DNA (705bp) protein (235aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTL8_9GAMM
Ubiquinone biosynthesis O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472, ECO:0000256|SAAS:SAAS00063564}; 2-polyprenyl-6-hydroxyphenol methylase {ECO:0000256|HAMAP-Rule:MF_00472}; 3-demethylubiquinone 3-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_5832_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13893..14576
DNA (684bp) protein (228aa)
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Phosphoglycolate phosphatase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5T8_9GAMM rbh
2-phosphoglycolate phosphatase rbh
SCNpilot_expt_500_bf_scaffold_5832_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14573..15427
DNA (855bp) protein (285aa)
Phytoene/squalene synthetase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5T9_9GAMM rbh
Phytoene/squalene synthetase {ECO:0000313|EMBL:EIL94830.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
phytoene/squalene synthetase rbh
SCNpilot_expt_500_bf_scaffold_5832_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15541..15864
DNA (324bp) protein (108aa)
GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase FolE2 {ECO:0000256|HAMAP-Rule:MF_01527}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_01527};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
GTP cyclohydrolase FolE2 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5U0_9GAMM
SCNpilot_expt_500_bf_scaffold_5832_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15846..16439
DNA (594bp) protein (198aa)
GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase FolE2 {ECO:0000256|HAMAP-Rule:MF_01527}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_01527};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
GTP cyclohydrolase FolE2 n=1 Tax=Rhodanobacter denitrificans RepID=I4WTM1_9GAMM
SCNpilot_expt_500_bf_scaffold_5832_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16799..17731
DNA (933bp) protein (311aa)
RNA polymerase-binding protein DksA n=2 Tax=Rhodanobacter denitrificans RepID=M4NEI0_9GAMM
RNA polymerase-binding protein DksA
RNA polymerase-binding protein DksA {ECO:0000313|EMBL:AGG88352.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying 21 items

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