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SCNpilot_expt_500_bf_scaffold_11887_7

Organism: SCNPILOT_EXPT_300_BF_Rhodanobacter_67_27

near complete RP 46 / 55 BSCG 46 / 51 MC: 3 ASCG 11 / 38 MC: 2
Location: comp(5199..5897)

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.8
  • Coverage: 232.0
  • Bit_score: 423
  • Evalue 1.50e-115
pseudouridine synthase family protein (EC:5.4.99.-) similarity KEGG
DB: KEGG
  • Identity: 86.6
  • Coverage: 232.0
  • Bit_score: 405
  • Evalue 1.30e-110
  • rbh
Pseudouridine synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W474_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 91.8
  • Coverage: 232.0
  • Bit_score: 423
  • Evalue 1.10e-115
  • rbh

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Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 699
ATGAAACTGGTCAAGCTGATCGCCAACCTCGGCTACGGCAGTCGCAAGGACGTGACCCGGCTGTTCCGCAGCGGTCGCATCACCGACGCCGATGGCGAGGTGCTCTACGCCGACGACGTGGTGCCGCTGGAAACCGTCCGCGTCGACGACGAGCCGCTGGACCCGCCGCCTGGCCTGGTGCTGATGTTGAACAAGCCGCTCGGTGTCACCTGCTCGCGCAAGGACCCGGGCCGCATCGTCTACGACCTGCTGCCGCCGCGCTACAGCGTGCGTACGCCCGCGCTGTCCACCGTGGGGCGACTGGACCGCGACACCTCCGGTTTGCTGCTGTTCACCGACGACGGCCCGCTGCTGCACCGGATCATTTCGCCGAAGGCGCAGGTGGCCAAGGTGTACGAGGCCACCCTCGCACAGGATCTGCGCGGCGACGAGGGCGCGCTGTTCGCCAGCGGCACGCTGCTGCTGGAATCGGAGAAGGAACCGCTGGCACCGGCGACACTCGATGTGCTGGGGCCGCGGCATGCCCGCCTGACCGTCACTGAGGGCCGCTATCACCAGGTTCGCCGGATGTTCGCTGCGGCGGGCAACCACGTGGAAACGCTGCAGCGGATTTCAGTCGGTGGACTCGCCTTGGGGGACCTGCGGCCCGGCGAATGGCGCGCCCTCGATGCCGCCGAGGTCGCGCTGATTTTCGCGTAG
PROTEIN sequence
Length: 233
MKLVKLIANLGYGSRKDVTRLFRSGRITDADGEVLYADDVVPLETVRVDDEPLDPPPGLVLMLNKPLGVTCSRKDPGRIVYDLLPPRYSVRTPALSTVGRLDRDTSGLLLFTDDGPLLHRIISPKAQVAKVYEATLAQDLRGDEGALFASGTLLLESEKEPLAPATLDVLGPRHARLTVTEGRYHQVRRMFAAAGNHVETLQRISVGGLALGDLRPGEWRALDAAEVALIFA*