ggKbase home page

SCNpilot_expt_500_bf_scaffold_385_11

Organism: SCNPILOT_CONT_300_BF_Bacteroidetes_43_15

near complete RP 51 / 55 MC: 1 BSCG 48 / 51 MC: 4 ASCG 12 / 38 MC: 2
Location: 8763..9341

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KUQ6_HALH1 similarity UNIREF
DB: UNIREF100
  • Identity: 43.5
  • Coverage: 168.0
  • Bit_score: 155
  • Evalue 7.80e-35
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 43.5
  • Coverage: 168.0
  • Bit_score: 155
  • Evalue 2.40e-35
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEE53459.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 43.5
  • Coverage: 168.0
  • Bit_score: 155
  • Evalue 1.10e-34

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Haliscomenobacter hydrossis → Haliscomenobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 579
TTGTCATTTGCTTTGGCATATAATAATATTTTGACAGGGACAAGCGAACTAGAAGCGTTAATATCTGGCTGTGCACGCAACGAAAGGGGTGCACAAGGCAAGCTATATGAGCTATTCTACCCAAGAATGATGGGTATGGTTCGTCGTTATTTTCCCGCACACGAATTAGCCGAAGAAATACTGAATAATGGCTTTCTGCGAGCCTTTCAAAAGATTGATAGCTATGGCTTTAAGGGCTCATTTGAAGGATGGTTGCGGAAGATAGTATTCCATGCCGTCTCCGATTATGCAAAAACGCAGGTCAAATATTCCGAAAATATCTTACTGGTTGAAAAAGATGAGTTTGTGTTGAAAGATGCAGCCAGTAGCCTGTATTATGACGACCTGATGAAGCTGGTATATGAGCTTCCGGAAACCGCAAGAGTAGTATTTAATATGTATGTGTTTGATGATCATTCACATAAAGATATATCTAAAACTTTGGGCATTAGTGAAGGCACCTCTAAATGGTACCTTTCTGAAGCCCGGAAAGCATTGAAACAAAAAATTGAAAAATTAGAATTACACCTTAAAAAGTAA
PROTEIN sequence
Length: 193
LSFALAYNNILTGTSELEALISGCARNERGAQGKLYELFYPRMMGMVRRYFPAHELAEEILNNGFLRAFQKIDSYGFKGSFEGWLRKIVFHAVSDYAKTQVKYSENILLVEKDEFVLKDAASSLYYDDLMKLVYELPETARVVFNMYVFDDHSHKDISKTLGISEGTSKWYLSEARKALKQKIEKLELHLKK*