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SCNpilot_expt_500_bf_scaffold_1163_8

Organism: SCNPILOT_CONT_300_BF_Bacteroidetes_43_15

near complete RP 51 / 55 MC: 1 BSCG 48 / 51 MC: 4 ASCG 12 / 38 MC: 2
Location: 11080..12441

Top 3 Functional Annotations

Value Algorithm Source
Sigma-54 factor interaction domain-containing protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XUT4_PEDHD similarity UNIREF
DB: UNIREF100
  • Identity: 54.3
  • Coverage: 451.0
  • Bit_score: 493
  • Evalue 2.20e-136
  • rbh
Chemotaxis protein CheY {ECO:0000313|EMBL:KEQ29666.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 55.4
  • Coverage: 451.0
  • Bit_score: 499
  • Evalue 4.20e-138
sigma-54 factor interaction domain-containing protein; K07713 two-component system, NtrC family, response regulator HydG similarity KEGG
DB: KEGG
  • Identity: 54.3
  • Coverage: 451.0
  • Bit_score: 493
  • Evalue 6.80e-137
  • rbh

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Taxonomy

Pedobacter antarcticus → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 1362
ATGGATAAAGTTCTTATAACAGAAGATGATATCACATTTGCCCAGATATTGGAACGGTATCTGAGCCGGCACGGATACGAAGTGGTACTGACACACAATGTGGAACAGGCAAAGACAGCGCTTAACAAGGATAAAGGATTTAAGGCAATGTTACTGGATTACCGGTTGCCCGATGGAAACGGATTAGATCTCCTCGATTTTAAAGTACAGCACAACATAAAGATACCCGTGATCATGATGACCAGCTTTAACGATGTTAAAGTAGCCGTTCAGTGTATCAAGAAAGGGGCCTACGAGTACATTACAAAGCCCATTAACCAGGAAGAGCTGTTGATGTTGCTCAAAAATGCAGGTACACCAGAGCCCCTTGTGGCCCGGGAAGAGCCTGAAAAAGTAGAAGAAACCAAAAAAGAATCCAAAGACGCTTTCGTGAAGGGAACTTCAGATGCAGCGCAGGTACTGCACCAGCATGTGGCCCTGGTAGCCCAGACAGAGATGTCGGTGCTGATCAACGGTGAGAGCGGTACCGGTAAAGAACATATAGCGCGTGCCCTGCATGACAGGAGCAAGCGGGCCTCCAAACCCTTCATAGCCGTAGACTGCGGTGCCTTATCCTCAGAACTGGCCGCCTCAGAGCTGTTTGGTCATGTTAAAGGGGCCTTTACAGGTGCCATTATCGACAAAACAGGCATCTTTGAACTGGCTAACGGTGGCACCATATTCCTGGATGAAGTAGGTAACCTGAGCTACGATGTACAGGTAAAGCTCTTACGAGCCATCGAACAAAGAGAAGTAGTACCCGTAGGCAGCCATAAGGTGATCAAAGTAGATGTAAGGCTGGTGACCGCGACCAATGAAGATTTTAAATCAGCCATCCAGAGCGCCAGTTTCCGGGAAGACCTCTATCACCGGATCAATGAATTCAAAATTAAGATCCCGGCCTTAAGAGAGCGCAGAGAAGATATTGATGAATTTATCCGCTACTTTATTCAAAAATCTAACCAGGAACTGCAAAAGAATGTAAGAGGCATAGATACTGACGTGCGTAAAATTTTCATGCAGTACCATTGGCCCGGCAATATCCGTGAATTGAAAAATATCATTAAGCGTGCCGTTCTGCTGGCCCAGGGCGACCTCATCACCAGGCTGGAGTTGCCCGAAGATATGGAACTCACCCTGATGGAGCAGGAACTGGAGCCTACTGCCGATCTTAAAGCCGTACAGCAGCAAACGGAGAAAGAACTTATTATCAAAACCCTTGCTGAAACTAAATACAACAAATCCAAAGCGGCCAAACTCTTAAATATTGATCGCACCACTTTGTACAACAAACTGGCAAAATATGGCATTGAAGACGTATAA
PROTEIN sequence
Length: 454
MDKVLITEDDITFAQILERYLSRHGYEVVLTHNVEQAKTALNKDKGFKAMLLDYRLPDGNGLDLLDFKVQHNIKIPVIMMTSFNDVKVAVQCIKKGAYEYITKPINQEELLMLLKNAGTPEPLVAREEPEKVEETKKESKDAFVKGTSDAAQVLHQHVALVAQTEMSVLINGESGTGKEHIARALHDRSKRASKPFIAVDCGALSSELAASELFGHVKGAFTGAIIDKTGIFELANGGTIFLDEVGNLSYDVQVKLLRAIEQREVVPVGSHKVIKVDVRLVTATNEDFKSAIQSASFREDLYHRINEFKIKIPALRERREDIDEFIRYFIQKSNQELQKNVRGIDTDVRKIFMQYHWPGNIRELKNIIKRAVLLAQGDLITRLELPEDMELTLMEQELEPTADLKAVQQQTEKELIIKTLAETKYNKSKAAKLLNIDRTTLYNKLAKYGIEDV*