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SCNpilot_expt_500_bf_scaffold_684_10

Organism: SCNpilot_BF_INOC_Burkholderiales_67_9

near complete RP 51 / 55 MC: 2 BSCG 50 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: 9287..11284

Top 3 Functional Annotations

Value Algorithm Source
tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; K15461 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] similarity KEGG
DB: KEGG
  • Identity: 52.6
  • Coverage: 666.0
  • Bit_score: 589
  • Evalue 1.30e-165
FAD-dependent cmnm(5)s(2)U34 oxidoreductase n=1 Tax=Variovorax paradoxus RepID=UPI00035C8127 similarity UNIREF
DB: UNIREF100
  • Identity: 52.6
  • Coverage: 664.0
  • Bit_score: 596
  • Evalue 2.70e-167
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC {ECO:0000256|HAMAP-Rule:MF_01102, ECO:0000256|SAAS:SAAS00084295}; Short=tRNA mnm(5)s(2)U biosynthesis bifunctional protein {ECO:0000256|HAMAP-Rule:MF_01102};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 52.6
  • Coverage: 666.0
  • Bit_score: 589
  • Evalue 6.00e-165

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1998
ATGCCCGACGAGATCGTCCACTGGCGCGCGGACGGCACGCCCACCAGCGCGCGCTTTGGCGACATCTACCGCAGCGCCGGCACCGACGGCCAGGGCGGGCTGGCGCAGGCACGGCTGGTGTTTCTGCGCGGCTGCGGCCTGTGGCCCGACGGCGACGCCCCCGCCGCCTGGGCCGATGCCGCGCGCTGGGCGGTGCTGGAAACCGGCTTCGGCCTGGGCCTGAACTTCCTGGCCACCTGGCGGGCCTGGCGGACCGACCCCCGGCGGCCTGCGCGGCTGTTCTACAGCGCGGTGGAAGCCTGGCCGCCCGCCGCCGCAGACCTGCTGCGCAGCGCCGCCCCCTACCCCGAGTTGCACGCATTGGCCGAGCAGCTGGCGGCCCAGTGGCACGGCCTGGGCCCCGGCGTGCACCGGCTGCGCTTCGACGCCGAGCAGGTGCAGCTGACGCTGTCGATCGGCGACGTGCAAGCCGCGCTGGCCGAGCTGAGTGGCGCGCACGACAGCGTGTTCCTCGACGGCTTCAGCCCCGCCCGCAACCCCGAGATGTGGAGCCTGCACACGCTCAAGGCGGTGGCCCGGCTGACGCGGCACGGCGCCATGGCCGCCAGCTGGTGCACCGCCGCCGAGGTGCGGCGCGATCTGAACACCTGCGGTTTCGAGGTCGAGCGCGTGCCCGGCCTGCCGCCCAAGCGCCACGCGCTGCGTGCCCGTTATGCGCCGCGCTGGGCCATGGCACGCCCCCGCGCCGACGCGCCCGCGCCAGTCGACGTGCCCGGCCGCTGCGCCATCGTCGGCGCCGGGCTGGCCGGTGCCTCGGTGGCCTGGAGCCTGGCGCAGCGCGGCTGGCAGGTCACCGTGCTCGACCGCGCGCCCCAGCCCGCCGCCGGCGCCAGCGGCCTGCCGGCCGGGGTCATCGCGCCCCACGTCTCGCCCGACGACCGGCCGGTGTCGCGCCTGACCCGCGCCGGCGCGCGCGCCACGCTGGCACGCGCGGCGCTGCTGCTGCGCGAGGGAGTGGACTGGGCCGCCAGCGGCGTGCTGGAGCGCCACGCCGCTGGCGAGCGGCGCCTGCCAGCCGAACTCACCGGCTCGGACGCCACGCGCAGCGACAGCCTGGATGCCCAGCAGCCGCTCACGCGCGCGCAGGCCGGCCGCGCCGGGCTGGCGCTGGACGACGTGCAGCGCGCCCTGTGGCACACCCGGGCCGGCTGGGTGCGCCCGCCGGCGCTGGTGCGCGCCATGCTGCAGGCGCCCGGCATCACGTGGCGCGGCGGCGTGGCGGTGGCGCGCGTCGAGCCCACCGCCAGCGGCTGGCAGGTGCACGACACGGCCGGCGCCCGGCTGGCCGAAGCCGAGCTGGTGGTGATTGCCGCCGGTTTCGATTCGCTGGCGCTGGCCGGCGGGCCGCTGCCACTGCACGCCTTGCGCGGTCAGGTGGCGTTCGGCCCCATGCCGGCGGGCGCGGCCGGCGCCACGCTGCCGCCCTTTCCCGTCAACGGCCACGGCAGCCTGATCGCCCACCTGCCGGGCGCGGACGGCCCGTGGTGGATCACCGGTTCGACCTTCGAGCGCGCCAACGCCCGACCCGACTGCACGCCCGCCGACCACGCCAGCAACCGCCAACGCCTGGCCGAATTGCTGCCCGCGGCGGCCGCCGCGCTCGACGCCCAGTGGCCGGACGGCCGCGCCCAGGCCTGGGCCGCGGTGCGCGCCACCCTGCCCGACCGGCTGCCGGCGGTCGGCGCCTGGCGGCCCGGCGGCCATCATGACGCCGAAGAAAATAAGGCTCCAGCGCTTACCCAGTCAGCGCAAGCAGCTATCGATTCAGAAGCAGATCATTCGCGCCTGCCCCTGCAGCTGTGCACCGGCCTGGGCGCCCGCGGCCTGACCCTGGCCGTACTGTGCGGCGAACTTCTGGCGGCCACGCTGCACGGCGAGCCGCTGCCCGTGGCGCGCTCGCTGGCGCAGCGCCTGCGCGCCGGGCGGTTCGCCTCATGA
PROTEIN sequence
Length: 666
MPDEIVHWRADGTPTSARFGDIYRSAGTDGQGGLAQARLVFLRGCGLWPDGDAPAAWADAARWAVLETGFGLGLNFLATWRAWRTDPRRPARLFYSAVEAWPPAAADLLRSAAPYPELHALAEQLAAQWHGLGPGVHRLRFDAEQVQLTLSIGDVQAALAELSGAHDSVFLDGFSPARNPEMWSLHTLKAVARLTRHGAMAASWCTAAEVRRDLNTCGFEVERVPGLPPKRHALRARYAPRWAMARPRADAPAPVDVPGRCAIVGAGLAGASVAWSLAQRGWQVTVLDRAPQPAAGASGLPAGVIAPHVSPDDRPVSRLTRAGARATLARAALLLREGVDWAASGVLERHAAGERRLPAELTGSDATRSDSLDAQQPLTRAQAGRAGLALDDVQRALWHTRAGWVRPPALVRAMLQAPGITWRGGVAVARVEPTASGWQVHDTAGARLAEAELVVIAAGFDSLALAGGPLPLHALRGQVAFGPMPAGAAGATLPPFPVNGHGSLIAHLPGADGPWWITGSTFERANARPDCTPADHASNRQRLAELLPAAAAALDAQWPDGRAQAWAAVRATLPDRLPAVGAWRPGGHHDAEENKAPALTQSAQAAIDSEADHSRLPLQLCTGLGARGLTLAVLCGELLAATLHGEPLPVARSLAQRLRAGRFAS*