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SCNpilot_expt_500_bf_scaffold_733_21

Organism: SCNPILOT_CONT_300_BF_Sphingomonadales_66_39

near complete RP 50 / 55 BSCG 47 / 51 ASCG 11 / 38 MC: 1
Location: comp(30501..31052)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-24 n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000287FEDD similarity UNIREF
DB: UNIREF100
  • Identity: 53.7
  • Coverage: 175.0
  • Bit_score: 192
  • Evalue 4.20e-46
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 57.9
  • Coverage: 159.0
  • Bit_score: 188
  • Evalue 1.90e-45
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABQ67290.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 57.9
  • Coverage: 159.0
  • Bit_score: 188
  • Evalue 8.50e-45

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Taxonomy

Sphingomonas wittichii → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 552
GTGGCGGAAACGGTGATCCCGTACGAGAGCACGGTACGGGCATGGCTGGTGCGCGCGCGCGTTTCGGAGGAGGATATCGATGACATCGTTCAGGAAGCCTATTGCCGCCTCGCCGCGCTCGACACGGTCGACCATATCACGCGTCCGGGCGCCTATTTCTTCTCGATCGTACGCAACCTGCTGCTGCAGCGCCTCAAGCGCGGCCGGATCGTATCGATCGACATGATCGCCGAGATCGAAACCTATGCGATCGACGACAGCCCCTCGCCCGAACGCGAAGCCGCGGGCCGGCTCGACTATGCGCGATTGCGCGCGATCATGGCCGGCCTGCCCGAACGCTGCCGGCGCATCGTCGAGATGCGCAAGATCGAGGGCATCTCCCAGAAGGAGATCGCGCGCCGCGTGGGCGTCAGCGAGAGCGTGGTCGAGAACGACGTCCATCAGGGCGTCCAGACGATCCTGCGCGTCTGGCGCGACGAGGACCGCCGGGTGATGGCGTGGCTGAACGGCTTCGAAGCCGGCACGCCGCGCGCGGACGGGGGGCGCCGGTAA
PROTEIN sequence
Length: 184
VAETVIPYESTVRAWLVRARVSEEDIDDIVQEAYCRLAALDTVDHITRPGAYFFSIVRNLLLQRLKRGRIVSIDMIAEIETYAIDDSPSPEREAAGRLDYARLRAIMAGLPERCRRIVEMRKIEGISQKEIARRVGVSESVVENDVHQGVQTILRVWRDEDRRVMAWLNGFEAGTPRADGGRR*