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SCNpilot_expt_500_bf_scaffold_733

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_733_1
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..336)
DNA (336bp) protein (112aa)
surface adhesion protein, partial n=1 Tax=Pseudomonas putida RepID=UPI00036E39D3
Uncharacterized protein {ECO:0000313|EMBL:GAM02317.1}; Flags: Fragment;; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
surface adhesion protein
SCNpilot_expt_500_bf_scaffold_733_2
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(293..2572)
DNA (2280bp) protein (760aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WZX7_9SPHN rbh
DNA, contig: SP607 {ECO:0000313|EMBL:GAN12387.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
surface adhesion protein
SCNpilot_expt_500_bf_scaffold_733_3
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2857..4488)
DNA (1632bp) protein (544aa)
sodium:proton antiporter n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000306F1F7 rbh
Scaffold1, whole genome shotgun sequence {ECO:0000313|EMBL:KIS34405.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
Na+/H+ antiporter rbh
SCNpilot_expt_500_bf_scaffold_733_4
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4567..5247)
DNA (681bp) protein (227aa)
hypothetical protein SMAC_10263 n=1 Tax=Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) RepID=UPI0001BF7413 rbh
hypothetical protein rbh
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:KFG88972.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
SCNpilot_expt_500_bf_scaffold_733_5
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5244..6746)
DNA (1503bp) protein (501aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
periplasmic sensor signal transduction histidine kinase; K07646 two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] rbh
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0HTZ0_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_733_6
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6994..7509
DNA (516bp) protein (172aa)
OmpA/MotB n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBD7_NOVAD
OmpA/MotB
OmpA/MotB {ECO:0000313|EMBL:ABD24836.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_500_bf_scaffold_733_7
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7577..8878
DNA (1302bp) protein (434aa)
Glycosyl transferase, group 1 n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VCY1_SPHWW rbh
group 1 glycosyl transferase rbh
Glycosyl transferase, group 1 {ECO:0000313|EMBL:ABQ70147.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_500_bf_scaffold_733_8
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8931..12062)
DNA (3132bp) protein (1044aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000381CD10 rbh
Sphingomonas taxi strain 30a NODE_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30142.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
amidohydrolase; K12941 aminobenzoyl-glutamate utilization protein B rbh
SCNpilot_expt_500_bf_scaffold_733_9
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12062..15475)
DNA (3414bp) protein (1138aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037CE136 rbh
TonB-dependent receptor {ECO:0000313|EMBL:ACG77037.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
TonB-dependent receptor rbh
SCNpilot_expt_500_bf_scaffold_733_10
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15686..16192
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037A4920
Sphingomonas taxi strain 30a NODE_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30115.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_500_bf_scaffold_733_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16189..16638
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00035F6C7B
Sphingomonas taxi strain 30a NODE_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30114.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_500_bf_scaffold_733_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16626..17057
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00035F6C7B
Sphingomonas taxi strain 30a NODE_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30114.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
anti-FecI sigma factor FecR; K07165 transmembrane sensor
SCNpilot_expt_500_bf_scaffold_733_13
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17066..17503)
DNA (438bp) protein (146aa)
Transcriptional regulator, AsnC family n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SX92_CAUSK
AsnC family transcriptional regulator
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ABZ70253.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_500_bf_scaffold_733_14
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17500..17829)
DNA (330bp) protein (110aa)
peptidase T n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B40F10
peptidase S51 dipeptidase E
Peptidase S51 dipeptidase E {ECO:0000313|EMBL:ABZ70251.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_500_bf_scaffold_733_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18687..21368
DNA (2682bp) protein (894aa)
TonB-dependent receptor n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B74A89 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO54297.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_733_16
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21365..22684
DNA (1320bp) protein (440aa)
peptidase M20 n=1 Tax=Sphingomonas elodea RepID=UPI00026306E4 rbh
peptidase M20 rbh
Peptidase M20 {ECO:0000313|EMBL:AGH47981.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_500_bf_scaffold_733_17
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22844..25393)
DNA (2550bp) protein (850aa)
TonB-dependent receptor plug n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VID4_CAUST rbh
TonB-dependent receptor-like protein {ECO:0000313|EMBL:KGB52707.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
TonB-dependent receptor plug rbh
SCNpilot_expt_500_bf_scaffold_733_18
unknown

Not on your lists

comp(25620..25811)
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_733_19
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26139..29468)
DNA (3330bp) protein (1110aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USH7_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:KGB52709.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
TonB-dependent receptor rbh
SCNpilot_expt_500_bf_scaffold_733_20
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29536..30501)
DNA (966bp) protein (322aa)
Anti-FecI sigma factor, FecR n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V4S3_SPHWW rbh
anti-FecI sigma factor FecR; K07165 transmembrane sensor rbh
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:ABQ67289.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_500_bf_scaffold_733_21
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30501..31052)
DNA (552bp) protein (184aa)
RNA polymerase subunit sigma-24 n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000287FEDD
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABQ67290.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_500_bf_scaffold_733_22
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31329..32366
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0H8X6_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:KGB58505.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_733_23
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32324..33313
DNA (990bp) protein (330aa)
Mandelate racemase {ECO:0000313|EMBL:KGB58506.1}; EC=5.1.2.2 {ECO:0000313|EMBL:KGB58506.1};; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
Mandelate racemase n=1 Tax=Sphingobium lactosutens DS20 RepID=T0ILZ8_9SPHN rbh
mandelate racemase rbh
SCNpilot_expt_500_bf_scaffold_733_24
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33349..34989
DNA (1641bp) protein (547aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRM9_9SPHN rbh
Putative hydrolase {ECO:0000313|EMBL:KGB58507.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
putative hydrolase rbh
SCNpilot_expt_500_bf_scaffold_733_25
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35093..37909
DNA (2817bp) protein (939aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRN1_9SPHN rbh
TonB-dependent receptor-like protein rbh
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_expt_500_bf_scaffold_733_26
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37924..39498
DNA (1575bp) protein (525aa)
putative hydrolase; K06015 N-acyl-D-amino-acid deacylase [EC:3.5.1.81] rbh
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRN2_9SPHN rbh
Putative hydrolase {ECO:0000313|EMBL:KGB58509.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
SCNpilot_expt_500_bf_scaffold_733_27
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39515..40294)
DNA (780bp) protein (260aa)
DeoR family transcripitonal regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B34A6F
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:KGB52163.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
DeoR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_733_28
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40363..41658)
DNA (1296bp) protein (432aa)
Putative sugar isomerase n=1 Tax=Caulobacter sp. AP07 RepID=J2GFU3_9CAUL rbh
Putative sugar isomerase {ECO:0000313|EMBL:EJL28850.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
xylose isomerase-like TIM barrel domain-containing protein
SCNpilot_expt_500_bf_scaffold_733_29
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41674..43791)
DNA (2118bp) protein (706aa)
short-chain dehydrogenase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489B87 rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:KGB52161.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
short chain dehydrogenase
SCNpilot_expt_500_bf_scaffold_733_30
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43905..44186
DNA (282bp) protein (94aa)
Carbohydrate kinase, FGGY n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8T722_9GAMM
Carbohydrate kinase, FGGY {ECO:0000313|EMBL:EIT69750.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
carbohydrate kinase
Displaying items 1-30 of 41 in total

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