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SCNpilot_expt_500_bf_scaffold_841_24

Organism: SCNPILOT_CONT_300_BF_Sphingomonadales_66_39

near complete RP 50 / 55 BSCG 47 / 51 ASCG 11 / 38 MC: 1
Location: 20414..21073

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma 70 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00036868BF similarity UNIREF
DB: UNIREF100
  • Identity: 90.1
  • Coverage: 212.0
  • Bit_score: 371
  • Evalue 6.00e-100
  • rbh
RNA polymerase sigma 70 {ECO:0000313|EMBL:AJP72032.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.5
  • Coverage: 216.0
  • Bit_score: 369
  • Evalue 3.20e-99
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 77.9
  • Coverage: 213.0
  • Bit_score: 317
  • Evalue 3.20e-84
  • rbh

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Taxonomy

Sphingomonas sp. WHSC-8 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 660
ATGAGTCAGTCCGAACAGCCCGAGGACAAGGGAACCGAGGCGCCGCAGGAGCATGTCTCGCTTTCCGACCCCGAGTTCAAGAAACAGCTCGCGATGGTCATCCCGCATCTGCGTGCCTTTGGCCGCTCGCTTTCCGGCAGCCGTGATCTCGCCGACGATCTGGTGCAGGAGACGCTGCTCAAGGCCTGGGCCGCGCGCAAGCGCTTCCAGGCGGGCACCAACATGCGCGCCTGGACCTTCATCATCCTGCGCAATCTCTATCTCAGCCAGATGCGCCGCGCGCGCTTCAAGGGCGAGTGGGACGATCTGGTCGCCGACCGGCTGCTCGCCGCGCCGGCGAGCCAGGACCGGCATGTCGAGCTTTCGGACATGCAGCGCGCGCTGCTCCATCTTCCCCAGCCGCAGCGCGAGGCGTTGATCCTCGTCGGGGCCGGCGGCTTCGCCTATGAAGAGGCGGCCGAGATCTGCCAGGTTGCCGTCGGTACCATCAAGAGCCGCGTCGCGCGCGGGCGCGTTGCGCTCGAACATCTGCTCAGCGAAGGCCAGCTGCCTTCGCGGCGCCTCGAGCCGGGCACTGCCGAGGGCAAGACGGCGCTCGACACGATCATGGGCGAAGTGGACGACCTCAGCCGCGATCGCGGCGACCTCTCGGCCAAGTAA
PROTEIN sequence
Length: 220
MSQSEQPEDKGTEAPQEHVSLSDPEFKKQLAMVIPHLRAFGRSLSGSRDLADDLVQETLLKAWAARKRFQAGTNMRAWTFIILRNLYLSQMRRARFKGEWDDLVADRLLAAPASQDRHVELSDMQRALLHLPQPQREALILVGAGGFAYEEAAEICQVAVGTIKSRVARGRVALEHLLSEGQLPSRRLEPGTAEGKTALDTIMGEVDDLSRDRGDLSAK*