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SCNpilot_expt_500_bf_scaffold_916_4

Organism: SCNPILOT_CONT_300_BF_Sphingomonadales_66_39

near complete RP 50 / 55 BSCG 47 / 51 ASCG 11 / 38 MC: 1
Location: comp(3651..4070)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z3U9_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 53.8
  • Coverage: 171.0
  • Bit_score: 150
  • Evalue 1.40e-33
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:AJP71264.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 75.9
  • Coverage: 108.0
  • Bit_score: 163
  • Evalue 2.20e-37
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 55.7
  • Coverage: 106.0
  • Bit_score: 119
  • Evalue 1.10e-24

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Taxonomy

Sphingomonas sp. WHSC-8 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 420
ATGGATTCGTCCTCGCAGACCGGCGGGTTGCAACGCGTGTTGGAAAATGAGCGGCCGCGGCTGCTCCGCTTCCTTGCGGCTCGCGGCGCGGGCGACGATGCGGAGGACGTGCGCGATCGCCAGCGCGCCTCGCTCAGCCGGGATCGGCGCCAGCATGAATGGCACGACCTCGCCGGGAGCGACGACGCTCCCCAGGGCGAGCGGGTGCTGATCGCGCGCGAGCGGCTGCGCGAGGCCGAGGCGACGCTGCTTGCGCTCGGGCCGCGAGTCGATCAGATTTTCCGTCGCTACCGGCTGGATGGGCTCGGCCAGGCAGCGATCGCTCGGGAATTGGGGATAAGCTTGAGCTCGGTGGAGAAGGATCTGCAAAAGGCATATCGCGCCCTTGCGCAACTCAAGGACAAATTCGATGCGGAATGA
PROTEIN sequence
Length: 140
MDSSSQTGGLQRVLENERPRLLRFLAARGAGDDAEDVRDRQRASLSRDRRQHEWHDLAGSDDAPQGERVLIARERLREAEATLLALGPRVDQIFRRYRLDGLGQAAIARELGISLSSVEKDLQKAYRALAQLKDKFDAE*